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Giant virus biology and diversity in the era of genome-resolved metagenomics
The discovery of giant viruses, with capsids as large as some bacteria, megabase-range
genomes and a variety of traits typically found only in cellular organisms, was one of the …
genomes and a variety of traits typically found only in cellular organisms, was one of the …
Tara Oceans: towards global ocean ecosystems biology
A planetary-scale understanding of the ocean ecosystem, particularly in light of climate
change, is crucial. Here, we review the work of Tara Oceans, an international …
change, is crucial. Here, we review the work of Tara Oceans, an international …
[HTML][HTML] Expansion of the global RNA virome reveals diverse clades of bacteriophages
High-throughput RNA sequencing offers broad opportunities to explore the Earth RNA
virome. Mining 5,150 diverse metatranscriptomes uncovered> 2.5 million RNA virus contigs …
virome. Mining 5,150 diverse metatranscriptomes uncovered> 2.5 million RNA virus contigs …
Mirusviruses link herpesviruses to giant viruses
DNA viruses have a major influence on the ecology and evolution of cellular organisms,,–,
but their overall diversity and evolutionary trajectories remain elusive. Here we carried out a …
but their overall diversity and evolutionary trajectories remain elusive. Here we carried out a …
Minimum information about an uncultivated virus genome (MIUViG)
We present an extension of the Minimum Information about any (x) Sequence (MIxS)
standard for reporting sequences of uncultivated virus genomes. Minimum Information about …
standard for reporting sequences of uncultivated virus genomes. Minimum Information about …
The gut ileal mucosal virome is disturbed in patients with Crohn's disease and exacerbates intestinal inflammation in mice
Z Cao, D Fan, Y Sun, Z Huang, Y Li, R Su… - Nature …, 2024 - nature.com
Gut bacteriome dysbiosis is known to be implicated in the pathogenesis of inflammatory
bowel disease (IBD). Crohn's disease (CD) is an IBD subtype with extensive mucosal …
bowel disease (IBD). Crohn's disease (CD) is an IBD subtype with extensive mucosal …
Microbial evolution through horizontal gene transfer by mobile genetic elements
M Tokuda, M Shintani - Microbial Biotechnology, 2024 - Wiley Online Library
Mobile genetic elements (MGEs) are crucial for horizontal gene transfer (HGT) in bacteria
and facilitate their rapid evolution and adaptation. MGEs include plasmids, integrative and …
and facilitate their rapid evolution and adaptation. MGEs include plasmids, integrative and …
ViPTree: the viral proteomic tree server
ViPTree is a web server provided through GenomeNet to generate viral proteomic trees for
classification of viruses based on genome-wide similarities. Users can upload viral genomes …
classification of viruses based on genome-wide similarities. Users can upload viral genomes …
Revisiting the rules of life for viruses of microorganisms
Viruses that infect microbial hosts have traditionally been studied in laboratory settings with
a focus on either obligate lysis or persistent lysogeny. In the environment, these infection …
a focus on either obligate lysis or persistent lysogeny. In the environment, these infection …
A multi-kingdom collection of 33,804 reference genomes for the human vaginal microbiome
L Huang, R Guo, S Li, X Wu, Y Zhang, S Guo, Y Lv… - Nature …, 2024 - nature.com
The human vagina harbours diverse microorganisms—bacteria, viruses and fungi—with
profound implications for women's health. Genome-level analysis of the vaginal microbiome …
profound implications for women's health. Genome-level analysis of the vaginal microbiome …