[HTML][HTML] Spatial and temporal organization of the genome: Current state and future aims of the 4D nucleome project
The four-dimensional nucleome (4DN) consortium studies the architecture of the genome
and the nucleus in space and time. We summarize progress by the consortium and highlight …
and the nucleus in space and time. We summarize progress by the consortium and highlight …
Volume electron microscopy
Life exists in three dimensions, but until the turn of the century most electron microscopy
methods provided only 2D image data. Recently, electron microscopy techniques capable of …
methods provided only 2D image data. Recently, electron microscopy techniques capable of …
Best practices and tools for reporting reproducible fluorescence microscopy methods
P Montero Llopis, RA Senft, TJ Ross-Elliott… - Nature …, 2021 - nature.com
Although fluorescence microscopy is ubiquitous in biomedical research, microscopy
methods reporting is inconsistent and perhaps undervalued. We emphasize the importance …
methods reporting is inconsistent and perhaps undervalued. We emphasize the importance …
OME-Zarr: a cloud-optimized bioimaging file format with international community support
J Moore, D Basurto-Lozada, S Besson… - Histochemistry and Cell …, 2023 - Springer
A growing community is constructing a next-generation file format (NGFF) for bioimaging to
overcome problems of scalability and heterogeneity. Organized by the Open Microscopy …
overcome problems of scalability and heterogeneity. Organized by the Open Microscopy …
MITI minimum information guidelines for highly multiplexed tissue images
The imminent release of tissue atlases combining multichannel microscopy with single-cell
sequencing and other omics data from normal and diseased specimens creates an urgent …
sequencing and other omics data from normal and diseased specimens creates an urgent …
QUAREP-LiMi: a community endeavor to advance quality assessment and reproducibility in light microscopy
The community-driven initiative Quality Assessment and Reproducibility for Instruments &
Images in Light Microscopy (QUAREP-LiMi) wants to improve reproducibility for light …
Images in Light Microscopy (QUAREP-LiMi) wants to improve reproducibility for light …
Quality assessment in light microscopy for routine use through simple tools and robust metrics
O Faklaris, L Bancel-Vallée, A Dauphin… - Journal of Cell …, 2022 - rupress.org
Although there is a need to demonstrate reproducibility in light microscopy acquisitions, the
lack of standardized guidelines monitoring microscope health status over time has so far …
lack of standardized guidelines monitoring microscope health status over time has so far …
A biologist's guide to planning and performing quantitative bioimaging experiments
Technological advancements in biology and microscopy have empowered a transition from
bioimaging as an observational method to a quantitative one. However, as biologists are …
bioimaging as an observational method to a quantitative one. However, as biologists are …
Open microscopy in the life sciences: quo vadis?
Light microscopy enables researchers to observe cellular mechanisms with high spatial and
temporal resolution. However, the increasing complexity of current imaging technologies …
temporal resolution. However, the increasing complexity of current imaging technologies …
A global view of standards for open image data formats and repositories
Imaging technologies are used throughout the life and biomedical sciences to understand
mechanisms in biology and diagnosis and therapy in animal and human medicine. We …
mechanisms in biology and diagnosis and therapy in animal and human medicine. We …