Global genetic diversity status and trends: towards a suite of Essential Biodiversity Variables (EBVs) for genetic composition

S Hoban, FI Archer, LD Bertola, JG Bragg… - Biological …, 2022 - Wiley Online Library
Biodiversity underlies ecosystem resilience, ecosystem function, sustainable economies,
and human well‐being. Understanding how biodiversity sustains ecosystems under …

Best practices in metabarcoding of fungi: from experimental design to results

L Tedersoo, M Bahram, L Zinger, RH Nilsson… - Molecular …, 2022 - Wiley Online Library
The development of high‐throughput sequencing (HTS) technologies has greatly improved
our capacity to identify fungi and unveil their ecological roles across a variety of ecosystems …

Fishing for fish environmental DNA: Ecological applications, methodological considerations, surveying designs, and ways forward

M Yao, S Zhang, Q Lu, X Chen, SY Zhang… - Molecular …, 2022 - Wiley Online Library
Vast global declines of freshwater and marine fish diversity and population abundance pose
serious threats to both ecosystem sustainability and human livelihoods. Environmental DNA …

Novel community data in ecology-properties and prospects

F Hartig, N Abrego, A Bush, JM Chase… - Trends in Ecology & …, 2024 - cell.com
New technologies for monitoring biodiversity such as environmental (e) DNA, passive
acoustic monitoring, and optical sensors promise to generate automated spatiotemporal …

Prospects and challenges of implementing DNA metabarcoding for high-throughput insect surveillance

AM Piper, J Batovska, NOI Cogan, J Weiss… - …, 2019 - academic.oup.com
Trap-based surveillance strategies are widely used for monitoring of invasive insect species,
aiming to detect newly arrived exotic taxa as well as track the population levels of …

Population‐level inferences from environmental DNA—Current status and future perspectives

EE Sigsgaard, MR Jensen… - Evolutionary …, 2020 - Wiley Online Library
Environmental DNA (eDNA) extracted from water samples has recently shown potential as a
valuable source of population genetic information for aquatic macroorganisms. This …

To denoise or to cluster, that is not the question: optimizing pipelines for COI metabarcoding and metaphylogeography

A Antich, C Palacin, OS Wangensteen, X Turon - BMC bioinformatics, 2021 - Springer
Background The recent blooming of metabarcoding applications to biodiversity studies
comes with some relevant methodological debates. One such issue concerns the treatment …

Environmental DNA for biomonitoring

J Pawlowski, A Bonin, F Boyer, T Cordier… - Molecular …, 2021 - pmc.ncbi.nlm.nih.gov
The second series of papers concerns the use of eDNA to monitor fish diversity. We focus on
fish because they are among the most important groups of bioindicators and also because …

Bioinformatic pipelines combining denoising and clustering tools allow for more comprehensive prokaryotic and eukaryotic metabarcoding

MI Brandt, B Trouche, L Quintric… - Molecular Ecology …, 2021 - Wiley Online Library
Environmental DNA metabarcoding is a powerful tool for studying biodiversity. However,
bioinformatic approaches need to adjust to the diversity of taxonomic compartments targeted …

Detecting and analysing intraspecific genetic variation with eDNA: From population genetics to species abundance

KJ Andres, DM Lodge, SA Sethi, J Andrés - Molecular Ecology, 2023 - Wiley Online Library
Advancements in environmental DNA (eDNA) approaches have allowed for rapid and
efficient species detections in diverse environments. Although most eDNA research is …