Covid-on-the-Web: Knowledge graph and services to advance COVID-19 research

F Michel, F Gandon, V Ah-Kane, A Bobasheva… - The Semantic Web …, 2020 - Springer
Scientists are harnessing their multi-disciplinary expertise and resources to fight the COVID-
19 pandemic. Aligned with this mindset, the Covid-on-the-Web project aims to allow …

Doc2Hpo: a web application for efficient and accurate HPO concept curation

C Liu, FS Peres Kury, Z Li, C Ta, K Wang… - Nucleic acids …, 2019 - academic.oup.com
Abstract We present Doc2Hpo, an interactive web application that enables interactive and
efficient phenotype concept curation from clinical text with automated concept normalization …

SIFR annotator: ontology-based semantic annotation of French biomedical text and clinical notes

A Tchechmedjiev, A Abdaoui, V Emonet, S Zevio… - BMC …, 2018 - Springer
Background Despite a wide adoption of English in science, a significant amount of
biomedical data are produced in other languages, such as French. Yet a majority of natural …

[PDF][PDF] Towards Semantic Integration for Explainable Artificial Intelligence in the Biomedical Domain.

C Pesquita - HEALTHINF, 2021 - pdfs.semanticscholar.org
Explainable artificial intelligence typically focuses on data-based explanations, lacking the
semantic context needed to produce human-centric explanations. This is especially relevant …

Cimind: A phonetic-based tool for multilingual named entity recognition in biomedical texts

C Cabot, S Darmoni, LF Soualmia - Journal of biomedical informatics, 2019 - Elsevier
Background Extracting concepts from biomedical texts is a key to support many advanced
applications such as biomedical information retrieval. However, in clinical notes Named …

[HTML][HTML] French FastContext: A publicly accessible system for detecting negation, temporality and experiencer in French clinical notes

M Mirzapour, A Abdaoui, A Tchechmedjiev… - Journal of Biomedical …, 2021 - Elsevier
The context of medical conditions is an important feature to consider when processing
clinical narratives. NegEx and its extension ConText became the most well-known rule …

Clinical concept recognition: evaluation of existing systems on EHRs

JA Lossio-Ventura, R Sun, S Boussard… - Frontiers in Artificial …, 2023 - frontiersin.org
Objective The adoption of electronic health records (EHRs) has produced enormous
amounts of data, creating research opportunities in clinical data sciences. Several concept …

[HTML][HTML] Relation extraction from DailyMed structured product labels by optimally combining crowd, experts and machines

K Shingjergji, R Celebi, J Scholtes… - Journal of Biomedical …, 2021 - Elsevier
The effectiveness of machine learning models to provide accurate and consistent results in
drug discovery and clinical decision support is strongly dependent on the quality of the data …

Mining concepts for a COVID interface terminology for annotation of EHRs

VK Keloth, S Zhou, L Lindemann… - … Conference on Big …, 2020 - ieeexplore.ieee.org
The COVID-19 pandemic has overwhelmed the healthcare services of many countries with
increased number of patients and also with a deluge of medical data. Furthermore, the …

Health record index: Secure access of cloud-stored healthcare data

A Kiourtis, A Mavrogiorgou, K Vidakis… - Studies in Health …, 2020 - ebooks.iospress.nl
Healthcare 4.0 demands healthcare data to be shaped into a common standardized and
interoperable format for achieving more efficient data exchange. What is also needed is for …