The impact of retrotransposons on human genome evolution

R Cordaux, MA Batzer - Nature reviews genetics, 2009 - nature.com
Their ability to move within genomes gives transposable elements an intrinsic propensity to
affect genome evolution. Non-long terminal repeat (LTR) retrotransposons—including LINE …

Methylation of endogenous human retroelements in health and disease

WA Schulz, C Steinhoff, AR Florl - DNA Methylation: Development, Genetic …, 2006 - Springer
Retroelements constitute approximately 45% of the human genome. Long interspersed
nuclear element (LINE) autonomous retrotransposons are predominantly represented by …

SVA elements: a hominid-specific retroposon family

H Wang, J **ng, D Grover, DJ Hedges, K Han… - Journal of molecular …, 2005 - Elsevier
SVA is a composite repetitive element named after its main components, SINE, VNTR and
Alu. We have identified 2762 SVA elements from the human genome draft sequence …

The evolutionary history of human DNA transposons: evidence for intense activity in the primate lineage

JK Pace, C Feschotte - Genome research, 2007 - genome.cshlp.org
Class 2, or DNA transposons, make up∼ 3% of the human genome, yet the evolutionary
history of these elements has been largely overlooked and remains poorly understood. Here …

Estimating the retrotransposition rate of human Alu elements

R Cordaux, DJ Hedges, SW Herke, MA Batzer - Gene, 2006 - Elsevier
Mobile elements such as Alu repeats have substantially altered the architecture of the
human genome, and de novo mobile element insertions sometimes cause genetic …

Multiple waves of recent DNA transposon activity in the bat, Myotis lucifugus

DA Ray, C Feschotte, HJT Pagan, JD Smith… - Genome …, 2008 - genome.cshlp.org
DNA transposons, or class 2 transposable elements, have successfully propagated in a
wide variety of genomes. However, it is widely believed that DNA transposon activity has …

Loss of epigenetic silencing in tumors preferentially affects primate-specific retroelements

S Szpakowski, X Sun, JM Lage, A Dyer, J Rubinstein… - Gene, 2009 - Elsevier
Close to 50% of the human genome harbors repetitive sequences originally derived from
mobile DNA elements, and in normal cells, this sequence compartment is tightly regulated …

LINEs and SINEs of primate evolution

MK Konkel, JA Walker, MA Batzer - … : Issues, News, and …, 2010 - Wiley Online Library
The primate order is a monophyletic group thought to have diverged from the Euarchonta
more than 65 mya. 1 Recent paleontological and molecular evolution studies place the last …

Sequence Analysis and Characterization of Active Human Alu Subfamilies Based on the 1000 Genomes Pilot Project

MK Konkel, JA Walker, AB Hotard… - Genome biology and …, 2015 - academic.oup.com
The goal of the 1000 Genomes Consortium is to characterize human genome structural
variation (SV), including forms of copy number variations such as deletions, duplications …

Using Alu Elements as Polyadenylation Sites: A Case of Retroposon Exaptation

C Chen, T Ara, D Gautheret - Molecular biology and evolution, 2009 - academic.oup.com
Of the 1.1 million Alu retroposons in the human genome, about 10,000 are inserted in the
3′ untranslated regions (UTR) of protein-coding genes and 1% of these (107 events) are …