Mutation rates, mutation frequencies, and proofreading-repair activities in RNA virus genetics

E Domingo, C García-Crespo, R Lobo-Vega, C Perales - Viruses, 2021 - mdpi.com
The error rate displayed during template copying to produce viral RNA progeny is a
biologically relevant parameter of the replication complexes of viruses. It has consequences …

Viral quasispecies evolution

E Domingo, J Sheldon, C Perales - Microbiology and Molecular …, 2012 - Am Soc Microbiol
Evolution of RNA viruses occurs through disequilibria of collections of closely related mutant
spectra or mutant clouds termed viral quasispecies. Here we review the origin of the …

The N501Y spike substitution enhances SARS-CoV-2 infection and transmission

Y Liu, J Liu, KS Plante, JA Plante, X **e, X Zhang, Z Ku… - Nature, 2022 - nature.com
Abstract The B. 1.1. 7 variant (also known as Alpha) of SARS-CoV-2, the cause of the COVID-
19 pandemic, emerged in the UK in the summer of 2020. The prevalence of this variant …

[HTML][HTML] Spike mutation D614G alters SARS-CoV-2 fitness

JA Plante, Y Liu, J Liu, H **a, BA Johnson… - Nature, 2021 - nature.com
The severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) spike protein
substitution D614G became dominant during the coronavirus disease 2019 (COVID-19) …

An amplicon-based sequencing framework for accurately measuring intrahost virus diversity using PrimalSeq and iVar

ND Grubaugh, K Gangavarapu, J Quick, NL Matteson… - Genome biology, 2019 - Springer
How viruses evolve within hosts can dictate infection outcomes; however, reconstructing this
process is challenging. We evaluate our multiplexed amplicon approach, PrimalSeq, to …

[HTML][HTML] The N501Y spike substitution enhances SARS-CoV-2 transmission

Y Liu, J Liu, KS Plante, JA Plante, X **e, X Zhang, Z Ku… - BioRxiv, 2021 - ncbi.nlm.nih.gov
Beginning in the summer of 2020, a variant of SARS-CoV-2, the cause of the COVID-19
pandemic, emerged in the United Kingdom (UK). This B. 1.1. 7 variant increased rapidly in …

Experimental design, population dynamics, and diversity in microbial experimental evolution

B Van den Bergh, T Swings, M Fauvart… - … and Molecular Biology …, 2018 - Am Soc Microbiol
In experimental evolution, laboratory-controlled conditions select for the adaptation of
species, which can be monitored in real time. Despite the current popularity of such …

Dengue—quo tu et quo vadis?

R Chen, N Vasilakis - Viruses, 2011 - mdpi.com
Dengue viruses (DENV) are by far the most important arboviral pathogens in the tropics
around the world, putting at risk of infection nearly a third of the global human population …

Virus-derived DNA drives mosquito vector tolerance to arboviral infection

B Goic, KA Stapleford, L Frangeul, AJ Doucet… - Nature …, 2016 - nature.com
Mosquitoes develop long-lasting viral infections without substantial deleterious effects,
despite high viral loads. This makes mosquitoes efficient vectors for emerging viral diseases …

Development of a highly protective combination monoclonal antibody therapy against Chikungunya virus

P Pal, KA Dowd, JD Brien, MA Edeling… - PLoS …, 2013 - journals.plos.org
Chikungunya virus (CHIKV) is a mosquito-transmitted alphavirus that causes global
epidemics of a debilitating polyarthritis in humans. As there is a pressing need for the …