According to Genome Sequencing Project statistics (http://www. ncbi. nlm. nih.
gov/genomes/static/gpstat. html), as of February 16, 2012, complete gene sequences have …

The fragmentation pathways of protonated peptides are reviewed in the present paper
paying special attention to classification of the known fragmentation channels into a simple …

The analysis of peptides and proteins as well as the grander scope of proteomics (large
scale study of proteins) has been advanced by the development of a versatile array of ion …

We present a novel scoring method for de novo interpretation of peptides from tandem mass
spectrometry data. Our scoring method uses a probabilistic network whose structure reflects …

De novo sequencing software has been widely used in proteomics to sequence new
peptides from tandem mass spectrometry data. This study presents a new software tool …

Mass-spectrometry-based proteomics enables quantitative analysis of thousands of human
proteins. However, experimental and computational challenges restrict progress in the field …

An algorithm for reducing the time necessary to match a large set of peptide tandem mass
spectra with a list of protein sequences is described. This algorithm breaks the process into …

Human immunodeficiency virus type 1 (HIV-1) infects CD4+ T lymphocytes and monocytes/
macrophages, incorporating host proteins in the process of assembly and budding. Analysis …

Reliable identification of posttranslational modifications is key to understanding various
cellular regulatory processes. We describe a tool, InsPecT, to identify posttranslational …

The performance of the current bottom-up liquid chromatography hyphenated with mass
spectrometry (LC-MS) analyses has undoubtedly been fueled by spectacular progress in …