Genome-wide genetic marker discovery and genoty** using next-generation sequencing

JW Davey, PA Hohenlohe, PD Etter, JQ Boone… - Nature Reviews …, 2011 - nature.com
The advent of next-generation sequencing (NGS) has revolutionized genomic and
transcriptomic approaches to biology. These new sequencing tools are also valuable for the …

Applications of next-generation sequencing to phylogeography and phylogenetics

JE McCormack, SM Hird, AJ Zellmer… - Molecular phylogenetics …, 2013 - Elsevier
This is a time of unprecedented transition in DNA sequencing technologies. Next-generation
sequencing (NGS) clearly holds promise for fast and cost-effective generation of multilocus …

Stacks: an analysis tool set for population genomics

J Catchen, PA Hohenlohe, S Bassham… - Molecular …, 2013 - Wiley Online Library
Massively parallel short‐read sequencing technologies, coupled with powerful software
platforms, are enabling investigators to analyse tens of thousands of genetic markers. This …

Double Digest RADseq: An Inexpensive Method for De Novo SNP Discovery and Genoty** in Model and Non-Model Species

BK Peterson, JN Weber, EH Kay, HS Fisher… - PloS one, 2012 - journals.plos.org
The ability to efficiently and accurately determine genotypes is a keystone technology in
modern genetics, crucial to studies ranging from clinical diagnostics, to genotype-phenotype …

Genome-wide scan for adaptive divergence and association with population-specific covariates

M Gautier - Genetics, 2015 - academic.oup.com
In population genomics studies, accounting for the neutral covariance structure across
population allele frequencies is critical to improve the robustness of genome-wide scan …

[KSIĄŻKA][B] Ecological speciation

P Nosil - 2012 - books.google.com
The origin of biological diversity, via the formation of new species, can be inextricably linked
to adaptation to the ecological environment. Specifically, ecological processes are central to …

PGDSpider: an automated data conversion tool for connecting population genetics and genomics programs

HEL Lischer, L Excoffier - Bioinformatics, 2012 - academic.oup.com
The analysis of genetic data often requires a combination of several approaches using
different and sometimes incompatible programs. In order to facilitate data exchange and file …

RAD seq underestimates diversity and introduces genealogical biases due to nonrandom haplotype sampling

B Arnold, RB Corbett‐Detig, D Hartl… - Molecular …, 2013 - Wiley Online Library
Reduced representation genome‐sequencing approaches based on restriction digestion
are enabling large‐scale marker generation and facilitating genomic studies in a wide range …

Genome‐wide association genetics of an adaptive trait in lodgepole pine

TL Parchman, Z Gompert, J Mudge… - Molecular …, 2012 - Wiley Online Library
Pine cones that remain closed and retain seeds until fire causes the cones to open (cone
serotiny) represent a key adaptive trait in a variety of pine species. In lodgepole pine, there …

Of glaciers and refugia: a decade of study sheds new light on the phylogeography of northwestern North America

ABA Shafer, CI Cullingham, SD Côté… - Molecular …, 2010 - Wiley Online Library
Glacial cycles have played a dominant role in sha** the genetic structure and distribution
of biota in northwestern North America. The two major ice age refugia of Beringia and the …