Molecular dynamics simulations of ionic liquids and electrolytes using polarizable force fields

D Bedrov, JP Piquemal, O Borodin… - Chemical …, 2019 - ACS Publications
Many applications in chemistry, biology, and energy storage/conversion research rely on
molecular simulations to provide fundamental insight into structural and transport properties …

Self-assembly, interfacial properties, interactions with macromolecules and molecular modelling and simulation of microbial bio-based amphiphiles (biosurfactants). A …

N Baccile, C Seyrig, A Poirier, S Alonso-de Castro… - Green …, 2021 - pubs.rsc.org
Chemical surfactants are omnipresent in consumer products, but they are the subject of
environmental concerns. For this reason, the complete replacement of petrochemical …

[HTML][HTML] PSI4 1.4: Open-source software for high-throughput quantum chemistry

DGA Smith, LA Burns, AC Simmonett… - The Journal of …, 2020 - pubs.aip.org
PSI4 is a free and open-source ab initio electronic structure program providing
implementations of Hartree–Fock, density functional theory, many-body perturbation theory …

[HTML][HTML] A suite of tutorials for the WESTPA rare-events sampling software [Article v1. 0]

AT Bogetti, B Mostofian, A Dickson… - Living journal of …, 2019 - ncbi.nlm.nih.gov
The weighted ensemble (WE) strategy has been demonstrated to be highly efficient in
generating pathways and rate constants for rare events such as protein folding and protein …

MB-pol (2023): Sub-chemical Accuracy for Water Simulations from the Gas to the Liquid Phase

X Zhu, M Riera, EF Bull-Vulpe… - Journal of Chemical …, 2023 - ACS Publications
We use the MB-pol theoretical/computational framework to introduce a new family of data-
driven many-body potential energy functions (PEFs) for water, named MB-pol (2023). By …

Development of a force field for the simulation of single-chain proteins and protein–protein complexes

S Piana, P Robustelli, D Tan, S Chen… - Journal of chemical …, 2020 - ACS Publications
The accuracy of atomistic physics-based force fields for the simulation of biological
macromolecules has typically been benchmarked experimentally using biophysical data …

Ligand binding free energy and kinetics calculation in 2020

V Limongelli - Wiley Interdisciplinary Reviews: Computational …, 2020 - Wiley Online Library
Ligand/protein binding (LPB) is a major topic in medicine, chemistry and biology. Since the
advent of computers, many scientists have put efforts in develo** theoretical models that …

Automation of AMOEBA polarizable force field for small molecules: Poltype 2

B Walker, C Liu, E Wait, P Ren - Journal of computational …, 2022 - Wiley Online Library
A next‐generation protocol (Poltype 2) has been developed which automatically generates
AMOEBA polarizable force field parameters for small molecules. Both features and …

Atoms in molecules in real space: a fertile field for chemical bonding

ÁM Pendás, E Francisco, D Suárez… - Physical Chemistry …, 2023 - pubs.rsc.org
In this perspective, we review some recent advances in the concept of atoms-in-molecules
from a real space perspective. We first introduce the general formalism of atomic weight …

Deuteration and polymers: rich history with great potential

L Li, J Jakowski, C Do, K Hong - Macromolecules, 2021 - ACS Publications
Deuterium, a stable hydrogen isotope, has been playing important roles in many scientific
areas, including polymer science. The developments of deuteration science and polymer …