A tutorial on how not to over-interpret STRUCTURE and ADMIXTURE bar plots
Genetic clustering algorithms, implemented in programs such as STRUCTURE and
ADMIXTURE, have been used extensively in the characterisation of individuals and …
ADMIXTURE, have been used extensively in the characterisation of individuals and …
Genetic diversity in farm animals–a review
LF Groeneveld, JA Lenstra, H Eding, MA Toro… - Animal …, 2010 - Wiley Online Library
Domestication of livestock species and a long history of migrations, selection and adaptation
have created an enormous variety of breeds. Conservation of these genetic resources relies …
have created an enormous variety of breeds. Conservation of these genetic resources relies …
Clumpak: a program for identifying clustering modes and packaging population structure inferences across K
The identification of the genetic structure of populations from multilocus genotype data has
become a central component of modern population‐genetic data analysis. Application of …
become a central component of modern population‐genetic data analysis. Application of …
Inference of population structure using dense haplotype data
The advent of genome-wide dense variation data provides an opportunity to investigate
ancestry in unprecedented detail, but presents new statistical challenges. We propose a …
ancestry in unprecedented detail, but presents new statistical challenges. We propose a …
Detecting the number of clusters of individuals using the software structure: a simulation study
The identification of genetically homogeneous groups of individuals is a long standing issue
in population genetics. A recent Bayesian algorithm implemented in the software structure …
in population genetics. A recent Bayesian algorithm implemented in the software structure …
CLUMPP: a cluster matching and permutation program for dealing with label switching and multimodality in analysis of population structure
Motivation: Clustering of individuals into populations on the basis of multilocus genotypes is
informative in a variety of settings. In population-genetic clustering algorithms, such as …
informative in a variety of settings. In population-genetic clustering algorithms, such as …
distruct: a program for the graphical display of population structure
NA Rosenberg - Molecular ecology notes, 2004 - Wiley Online Library
In analysis of multilocus genotypes from structured populations, individual coefficients of
membership in subpopulations are often estimated using programs such as structure …
membership in subpopulations are often estimated using programs such as structure …
Genetic structure of human populations
We studied human population structure using genotypes at 377 autosomal microsatellite loci
in 1056 individuals from 52 populations. Within-population differences among individuals …
in 1056 individuals from 52 populations. Within-population differences among individuals …
A review on SNP and other types of molecular markers and their use in animal genetics
During the last ten years, the use of molecular markers, revealing polymorphism at the DNA
level, has been playing an increasing part in animal genetics studies. Amongst others, the …
level, has been playing an increasing part in animal genetics studies. Amongst others, the …
Genetic diversity and population structure assessed by SSR and SNP markers in a large germplasm collection of grape
F Emanuelli, S Lorenzi, L Grzeskowiak, V Catalano… - BMC plant biology, 2013 - Springer
Background The economic importance of grapevine has driven significant efforts in
genomics to accelerate the exploitation of Vitis resources for development of new cultivars …
genomics to accelerate the exploitation of Vitis resources for development of new cultivars …