A tutorial on how not to over-interpret STRUCTURE and ADMIXTURE bar plots

DJ Lawson, L Van Dorp, D Falush - Nature communications, 2018 - nature.com
Genetic clustering algorithms, implemented in programs such as STRUCTURE and
ADMIXTURE, have been used extensively in the characterisation of individuals and …

Genetic diversity in farm animals–a review

LF Groeneveld, JA Lenstra, H Eding, MA Toro… - Animal …, 2010 - Wiley Online Library
Domestication of livestock species and a long history of migrations, selection and adaptation
have created an enormous variety of breeds. Conservation of these genetic resources relies …

Clumpak: a program for identifying clustering modes and packaging population structure inferences across K

NM Kopelman, J Mayzel, M Jakobsson… - Molecular ecology …, 2015 - Wiley Online Library
The identification of the genetic structure of populations from multilocus genotype data has
become a central component of modern population‐genetic data analysis. Application of …

Inference of population structure using dense haplotype data

DJ Lawson, G Hellenthal, S Myers, D Falush - PLoS genetics, 2012 - journals.plos.org
The advent of genome-wide dense variation data provides an opportunity to investigate
ancestry in unprecedented detail, but presents new statistical challenges. We propose a …

Detecting the number of clusters of individuals using the software structure: a simulation study

G Evanno, S Regnaut, J Goudet - Molecular ecology, 2005 - Wiley Online Library
The identification of genetically homogeneous groups of individuals is a long standing issue
in population genetics. A recent Bayesian algorithm implemented in the software structure …

CLUMPP: a cluster matching and permutation program for dealing with label switching and multimodality in analysis of population structure

M Jakobsson, NA Rosenberg - Bioinformatics, 2007 - academic.oup.com
Motivation: Clustering of individuals into populations on the basis of multilocus genotypes is
informative in a variety of settings. In population-genetic clustering algorithms, such as …

distruct: a program for the graphical display of population structure

NA Rosenberg - Molecular ecology notes, 2004 - Wiley Online Library
In analysis of multilocus genotypes from structured populations, individual coefficients of
membership in subpopulations are often estimated using programs such as structure …

Genetic structure of human populations

NA Rosenberg, JK Pritchard, JL Weber, HM Cann… - science, 2002 - science.org
We studied human population structure using genotypes at 377 autosomal microsatellite loci
in 1056 individuals from 52 populations. Within-population differences among individuals …

A review on SNP and other types of molecular markers and their use in animal genetics

A Vignal, D Milan, M SanCristobal… - Genetics selection …, 2002 - gse-journal.org
During the last ten years, the use of molecular markers, revealing polymorphism at the DNA
level, has been playing an increasing part in animal genetics studies. Amongst others, the …

Genetic diversity and population structure assessed by SSR and SNP markers in a large germplasm collection of grape

F Emanuelli, S Lorenzi, L Grzeskowiak, V Catalano… - BMC plant biology, 2013 - Springer
Background The economic importance of grapevine has driven significant efforts in
genomics to accelerate the exploitation of Vitis resources for development of new cultivars …