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Harnessing the power of RADseq for ecological and evolutionary genomics
High-throughput techniques based on restriction site-associated DNA sequencing (RADseq)
are enabling the low-cost discovery and genoty** of thousands of genetic markers for any …
are enabling the low-cost discovery and genoty** of thousands of genetic markers for any …
A genomic perspective on hybridization and speciation
Hybridization among diverging lineages is common in nature. Genomic data provide a
special opportunity to characterize the history of hybridization and the genetic basis of …
special opportunity to characterize the history of hybridization and the genetic basis of …
Stacks 2: Analytical methods for paired‐end sequencing improve RADseq‐based population genomics
For half a century population genetics studies have put type II restriction endonucleases to
work. Now, coupled with massively‐parallel, short‐read sequencing, the family of RAD …
work. Now, coupled with massively‐parallel, short‐read sequencing, the family of RAD …
dartR v2: An accessible genetic analysis platform for conservation, ecology and agriculture
Innumerable approaches to analyse genetic data are now available to guide conservation,
ecological and agricultural projects. However, streamlined and accessible tools are needed …
ecological and agricultural projects. However, streamlined and accessible tools are needed …
Deriving genotypes from RAD-seq short-read data using Stacks
Restriction site-associated DNA sequencing (RAD-seq) allows for the genome-wide
discovery and genoty** of single-nucleotide polymorphisms in hundreds of individuals at …
discovery and genoty** of single-nucleotide polymorphisms in hundreds of individuals at …
TASSEL-GBS: a high capacity genoty** by sequencing analysis pipeline
Genoty** by sequencing (GBS) is a next generation sequencing based method that takes
advantage of reduced representation to enable high throughput genoty** of large …
advantage of reduced representation to enable high throughput genoty** of large …
Genoty**-by-sequencing (GBS), an ultimate marker-assisted selection (MAS) tool to accelerate plant breeding
J He, X Zhao, A Laroche, ZX Lu, HK Liu… - Frontiers in plant …, 2014 - frontiersin.org
Marker-assisted selection (MAS) refers to the use of molecular markers to assist phenotypic
selections in crop improvement. Several types of molecular markers, such as single …
selections in crop improvement. Several types of molecular markers, such as single …
RAD capture (Rapture): flexible and efficient sequence-based genoty**
Massively parallel sequencing has revolutionized many areas of biology, but sequencing
large amounts of DNA in many individuals is cost-prohibitive and unnecessary for many …
large amounts of DNA in many individuals is cost-prohibitive and unnecessary for many …
Ecological genomics meets community‐level modelling of biodiversity: Map** the genomic landscape of current and future environmental adaptation
Local adaptation is a central feature of most species occupying spatially heterogeneous
environments, and may factor critically in responses to environmental change. However …
environments, and may factor critically in responses to environmental change. However …
Genoty**‐in‐Thousands by sequencing (GT‐seq): A cost effective SNP genoty** method based on custom amplicon sequencing
NR Campbell, SA Harmon… - Molecular ecology …, 2015 - Wiley Online Library
Genoty**‐in‐Thousands by sequencing (GT‐seq) is a method that uses next‐generation
sequencing of multiplexed PCR products to generate genotypes from relatively small panels …
sequencing of multiplexed PCR products to generate genotypes from relatively small panels …