Quadruplex nucleic acids as novel therapeutic targets

S Neidle - Journal of medicinal chemistry, 2016 - ACS Publications
Quadruplex-forming sequences are widely prevalent in human and other genomes,
including bacterial ones. These sequences are over-represented in eukaryotic telomeres …

Advances in the development of shape similarity methods and their application in drug discovery

A Kumar, KYJ Zhang - Frontiers in chemistry, 2018 - frontiersin.org
Molecular similarity is a key concept in drug discovery. It is based on the assumption that
structurally similar molecules frequently have similar properties. Assessment of similarity …

Challenges, applications, and recent advances of protein-ligand docking in structure-based drug design

SZ Grinter, X Zou - Molecules, 2014 - mdpi.com
The docking methods used in structure-based virtual database screening offer the ability to
quickly and cheaply estimate the affinity and binding mode of a ligand for the protein …

SARS-CoV-2 Nsp3 unique domain SUD interacts with guanine quadruplexes and G4-ligands inhibit this interaction

M Lavigne, O Helynck, P Rigolet… - Nucleic acids …, 2021 - academic.oup.com
The multidomain non-structural protein 3 (Nsp3) is the largest protein encoded by
coronavirus (CoV) genomes and several regions of this protein are essential for viral …

Small-molecule quadruplex-targeted drug discovery

SA Ohnmacht, S Neidle - Bioorganic & medicinal chemistry letters, 2014 - Elsevier
Repeated guanine tracts in human and other genomes can form higher-order four stranded
structures, termed quadruplexes. In the human genome they have particular prevalence in …

Hierarchical virtual screening approaches in small molecule drug discovery

A Kumar, KYJ Zhang - Methods, 2015 - Elsevier
Virtual screening has played a significant role in the discovery of small molecule inhibitors of
therapeutic targets in last two decades. Various ligand and structure-based virtual screening …

G-quadruplex structures in the human genome as novel therapeutic targets

J Bidzinska, G Cimino-Reale, N Zaffaroni, M Folini - Molecules, 2013 - mdpi.com
G-quadruplexes are secondary structures that may form within guanine-rich nucleic acid
sequences. Telomeres have received much attention in this regard since they can fold into …

Ligand binding to telomeric G-quadruplex DNA investigated by funnel-metadynamics simulations

F Moraca, J Amato, F Ortuso, A Artese… - Proceedings of the …, 2017 - National Acad Sciences
G-quadruplexes (G4s) are higher-order DNA structures typically present at promoter regions
of genes and telomeres. Here, the G4 formation decreases the replicative DNA at each cell …

Artificial intelligence and quantum computing as the next pharma disruptors

T Cova, C Vitorino, M Ferreira, S Nunes… - Artificial intelligence in …, 2022 - Springer
Artificial intelligence (AI) consists of a synergistic assembly of enhanced optimization
strategies with wide application in drug discovery and development, providing advanced …

Challenges and current status of computational methods for docking small molecules to nucleic acids

J Luo, W Wei, J Waldispühl, N Moitessier - European journal of medicinal …, 2019 - Elsevier
Since the development of the first docking program in 1982, the use of docking-based in
silico screening for potentially bioactive molecule discovery has become a common strategy …