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[HTML][HTML] Macromolecular structure determination using X-rays, neutrons and electrons: recent developments in Phenix
Diffraction (X-ray, neutron and electron) and electron cryo-microscopy are powerful methods
to determine three-dimensional macromolecular structures, which are required to …
to determine three-dimensional macromolecular structures, which are required to …
Small-angle X-ray and neutron scattering
Small-angle scattering (SAS) is a technique that is able to probe the structural organization
of matter and quantify its response to changes in external conditions. X-ray and neutron …
of matter and quantify its response to changes in external conditions. X-ray and neutron …
US-align: universal structure alignments of proteins, nucleic acids, and macromolecular complexes
Abstract Structure comparison and alignment are of fundamental importance in structural
biology studies. We developed the first universal platform, US-align, to uniformly align …
biology studies. We developed the first universal platform, US-align, to uniformly align …
[HTML][HTML] ATSAS 3.0: expanded functionality and new tools for small-angle scattering data analysis
K Manalastas-Cantos, PV Konarev… - Applied …, 2021 - journals.iucr.org
The ATSAS software suite encompasses a number of programs for the processing,
visualization, analysis and modelling of small-angle scattering data, with a focus on the data …
visualization, analysis and modelling of small-angle scattering data, with a focus on the data …
RCSB Protein Data Bank: architectural advances towards integrated searching and efficient access to macromolecular structure data from the PDB archive
Abstract The US Research Collaboratory for Structural Bioinformatics Protein Data Bank
(RCSB PDB) serves many millions of unique users worldwide by delivering experimentally …
(RCSB PDB) serves many millions of unique users worldwide by delivering experimentally …
ProDy 2.0: increased scale and scope after 10 years of protein dynamics modelling with Python
ProDy, an integrated application programming interface developed for modelling and
analysing protein dynamics, has significantly evolved in recent years in response to the …
analysing protein dynamics, has significantly evolved in recent years in response to the …
Principles of the battery data genome
Batteries are central to modern society. They are no longer just a convenience but a critical
enabler of the transition to a resilient, low-carbon economy. Battery development capabilities …
enabler of the transition to a resilient, low-carbon economy. Battery development capabilities …
The protein data bank archive
Abstract Protein Data Bank is the single worldwide archive of experimentally determined
macromolecular structure data. Established in 1971 as the first open access data resource in …
macromolecular structure data. Established in 1971 as the first open access data resource in …
PDBx/mmCIF ecosystem: foundational semantic tools for structural biology
Abstract PDBx/mmCIF, Protein Data Bank Exchange (PDBx) macromolecular
Crystallographic Information Framework (mmCIF), has become the data standard for …
Crystallographic Information Framework (mmCIF), has become the data standard for …
Implementation of residue-level coarse-grained models in GENESIS for large-scale molecular dynamics simulations
Residue-level coarse-grained (CG) models have become one of the most popular tools in
biomolecular simulations in the trade-off between modeling accuracy and computational …
biomolecular simulations in the trade-off between modeling accuracy and computational …