Evolutions in 3D numerical relativity using fixed mesh refinement

E Schnetter, SH Hawley, I Hawke - Classical and quantum gravity, 2004 - iopscience.iop.org
We present results of 3D numerical simulations using a finite difference code featuring fixed
mesh refinement (FMR), in which a subset of the computational domain is refined in space …

The cactus framework and toolkit: design and applications: invited talk

T Goodale, G Allen, G Lanfermann, J Massó… - … —VECPAR 2002: 5th …, 2003 - Springer
We describe Cactus, a framework for building a variety of computing applications in science
and engineering, including astrophysics, relativity and chemical engineering. We first …

Design and evaluation of a resource selection framework for grid applications

C Liu, L Yang, I Foster, D Angulo - Proceedings 11th IEEE …, 2002 - ieeexplore.ieee.org
While distributed, heterogeneous collections of computers (" Grids") can in principle be used
as a computing platform, in practice the problems of first discovering and then organizing …

Conservative scheduling: Using predicted variance to improve scheduling decisions in dynamic environments

L Yang, JM Schopf, I Foster - Proceedings of the 2003 ACM/IEEE …, 2003 - dl.acm.org
In heterogeneous and dynamic environments, efficient execution of parallel computations
can require map**s of tasks to processors whose performance is both irregular (because …

Kranc: a Mathematica package to generate numerical codes for tensorial evolution equations

S Husa, I Hinder, C Lechner - Computer Physics Communications, 2006 - Elsevier
We present a suite of Mathematica-based computer-algebra packages, termed “Kranc”,
which comprise a toolbox to convert certain (tensorial) systems of partial differential …

The Cactus Worm: Experiments with dynamic resource discovery and allocation in a grid environment

G Allen, D Angulo, I Foster… - … Journal of High …, 2001 - journals.sagepub.com
The ability to harness heterogeneous, dynamically available grid resources is attractive to
typically resource-starved computational scientists and engineers, as in principle it can …

MCREngine: A scalable checkpointing system using data-aware aggregation and compression

TZ Islam, K Mohror, S Bagchi, A Moody… - SC'12: Proceedings …, 2012 - ieeexplore.ieee.org
High performance computing (HPC) systems use checkpoint-restart to tolerate failures.
Typically, applications store their states in checkpoints on a parallel file system (PFS). As …

Repurposing anti-dengue compounds against monkeypox virus targeting core cysteine protease

M Imran, Abida, NM Alotaibi, HK Thabet, JA Alruwaili… - Biomedicines, 2023 - mdpi.com
The monkeypox virus (MPXV) is an enveloped, double-stranded DNA virus belonging to the
genus Orthopox viruses. In recent years, the virus has spread to countries where it was …

Visual supercomputing: Technologies, applications and challenges

K Brodlie, J Brooke, M Chen, D Chisnall… - Computer Graphics …, 2005 - Wiley Online Library
If we were to have a Grid infrastructure for visualization, what technologies would be needed
to build such an infrastructure, what kind of applications would benefit from it, and what …

Cheminformatics and machine learning approaches for repurposing anti-viral compounds against monkeypox virus thymidylate kinase

AA Rabaan, ASS Alwashmi, MM Mashraqi… - Molecular Diversity, 2023 - Springer
One of the emerging epidemic concerns is Monkeypox disease which is spreading globally.
This disease is caused by the monkeypox virus (MPXV), with an increasing global incidence …