Fine map** and gene cloning in the post-NGS era: advances and prospects

D Jaganathan, A Bohra, M Thudi… - Theoretical and Applied …, 2020 - Springer
Improvement in traits of agronomic importance is the top breeding priority of crop
improvement programs. Majority of these agronomic traits show complex quantitative …

Tomato leaf curl New Delhi virus: an emerging virus complex threatening vegetable and fiber crops

E Moriones, S Praveen, S Chakraborty - Viruses, 2017 - mdpi.com
The tomato leaf curl New Delhi virus (ToLCNDV)(genus Begomovirus, family Geminiviridae)
represents an important constraint to tomato production, as it causes the most predominant …

CRISPR/Cas9-mediated viral interference in plants

Z Ali, A Abulfaraj, A Idris, S Ali, M Tashkandi… - Genome biology, 2015 - Springer
Abstract Background The CRISPR/Cas9 system provides bacteria and archaea with
molecular immunity against invading phages and conjugative plasmids. Recently …

Genome-wide analysis of tomato long non-coding RNAs and identification as endogenous target mimic for microRNA in response to TYLCV infection

J Wang, W Yu, Y Yang, X Li, T Chen, T Liu, N Ma… - Scientific reports, 2015 - nature.com
Recently, a large number of long noncoding RNAs (lncRNAs) have emerged as important
regulators of many biological processes in animals and plants. However, how lncRNAs …

Next-generation sequencing and genome editing in plant virology

A Hadidi, R Flores, T Candresse, M Barba - Frontiers in microbiology, 2016 - frontiersin.org
Next-generation sequencing (NGS) has been applied to plant virology since 2009. NGS
provides highly efficient, rapid, low cost DNA, or RNA high-throughput sequencing of the …

[HTML][HTML] Conventional and molecular marker-assisted selection and pyramiding of genes for multiple disease resistance in tomato

P Hanson, SF Lu, JF Wang, W Chen, L Kenyon… - Scientia …, 2016 - Elsevier
Tomato (Solanum lycopersicum L.) is widely grown in the tropics but production is subject to
high losses from diseases. AVRDC—The World Vegetable Center initiated a program to …

An NB-LRR gene, TYNBS1, is responsible for resistance mediated by the Ty-2 Begomovirus resistance locus of tomato

H Yamaguchi, J Ohnishi, A Saito, A Ohyama… - Theoretical and Applied …, 2018 - Springer
Abstract Key message An NB-LRR gene, TYNBS1, was isolated from Begomovirus-
resistance locus Ty-2. Transgenic plant analysis revealed that TYNBS1 is a functional …

Ty-6, a major begomovirus resistance gene on chromosome 10, is effective against Tomato yellow leaf curl virus and Tomato mottle virus

U Gill, JW Scott, R Shekasteband, E Ogundiwin… - Theoretical and Applied …, 2019 - Springer
Key message Ty-6 is a major resistance gene on chromosome 10 of tomato that provides
resistance against monopartite and bipartite begomoviruses and complements resistance …

Resistance to tomato yellow leaf curl virus in tomato germplasm

Z Yan, A Pérez-de-Castro, MJ Díez, SF Hutton… - Frontiers in Plant …, 2018 - frontiersin.org
Tomato yellow leaf curl virus (TYLCV) is a virus species causing epidemics in tomato
(Solanum lycopersicum) worldwide. Many efforts have been focused on identification of …

Genome-wide analysis of bHLH transcription factor and involvement in the infection by yellow leaf curl virus in tomato (Solanum lycopersicum)

J Wang, Z Hu, T Zhao, Y Yang, T Chen, M Yang, W Yu… - BMC genomics, 2015 - Springer
Background The basic helix-loop-helix (bHLH) proteins are a superfamily of transcription
factors that can bind to specific DNA target sites. They have been well characterized in …