phytools 2.0: an updated R ecosystem for phylogenetic comparative methods (and other things)
LJ Revell - PeerJ, 2024 - peerj.com
Phylogenetic comparative methods comprise the general endeavor of using an estimated
phylogenetic tree (or set of trees) to make secondary inferences: about trait evolution …
phylogenetic tree (or set of trees) to make secondary inferences: about trait evolution …
The macroevolutionary history of bony fishes: a paleontological view
M Friedman - Annual Review of Ecology, Evolution, and …, 2022 - annualreviews.org
Bony fishes are the principal group of backboned animals in contemporary aquatic settings.
Extant species are the focus of a vigorous program of macroevolutionary research, but …
Extant species are the focus of a vigorous program of macroevolutionary research, but …
Estimating diversification rates on incompletely sampled phylogenies: theoretical concerns and practical solutions
Molecular phylogenies are a key source of information about the tempo and mode of
species diversification. However, most empirical phylogenies do not contain representatives …
species diversification. However, most empirical phylogenies do not contain representatives …
Do morphometric data improve phylogenetic reconstruction? A systematic review and assessment
Isolating phylogenetic signal from morphological data is crucial for accurately merging
fossils into the tree of life and for calibrating molecular dating. However, subjective character …
fossils into the tree of life and for calibrating molecular dating. However, subjective character …
No substitute for real data: a cautionary note on the use of phylogenies from birth–death polytomy resolvers for downstream comparative analyses
DL Rabosky - Evolution, 2015 - academic.oup.com
The statistical estimation of phylogenies is always associated with uncertainty, and
accommodating this uncertainty is an important component of modern phylogenetic …
accommodating this uncertainty is an important component of modern phylogenetic …
Definition of the Caribbean Islands biogeographic region, with checklist and recommendations for standardized common names of amphibians and reptiles
SB Hedges, R Powell, RW Henderson, S Hanson… - 2019 - bvearmb.do
To facilitate biological study we define “Caribbean Islands” as a biogeographic region that
includes the Antilles, the Bahamas, and islands bordering Central and South America …
includes the Antilles, the Bahamas, and islands bordering Central and South America …
Bayesian placement of fossils on phylogenies using quantitative morphometric data
C Parins-Fukuchi - Evolution, 2018 - academic.oup.com
Jointly develo** a comprehensive tree of life from living and fossil taxa has long been a
fundamental goal in evolutionary biology. One major challenge has stemmed from …
fundamental goal in evolutionary biology. One major challenge has stemmed from …
Fixation and preservation contribute to distortion in vertebrate museum specimens: a 10-year study with the lizard Anolis sagrei
Preservation of museum specimens depends on chemical fixation and preservation,
processes that might distort the original material. Relatively few studies have examined the …
processes that might distort the original material. Relatively few studies have examined the …
Trophic specializations of damselfishes are tightly associated with reef habitats and social behaviours
Despite the increasing need to understand factors sha** community assembly, few
studies have simultaneously explored the influence of niche-based and phylogenetic …
studies have simultaneously explored the influence of niche-based and phylogenetic …
Mosaic adaptive peak shifts underlie body shape diversification in pelagiarian fishes (Acanthomorpha: Percomorpha)
Extreme body elongation in fishes is a major evolutionary transformation that extends the
boundaries of morphological diversity and alters aspects of function, behaviour and ecology …
boundaries of morphological diversity and alters aspects of function, behaviour and ecology …