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Micropeptides encoded in transcripts previously identified as long noncoding RNAs: a new chapter in transcriptomics and proteomics
F Yeasmin, T Yada, N Akimitsu - Frontiers in genetics, 2018 - frontiersin.org
Integrative analysis using omics-based technologies results in the identification of a large
number of putative short open reading frames (sORFs) with protein-coding capacity within …
number of putative short open reading frames (sORFs) with protein-coding capacity within …
Alternative translation start sites and hidden coding potential of eukaryotic mRNAs
AV Kochetov - Bioessays, 2008 - Wiley Online Library
It is widely suggested that a eukaryotic mRNA typically contains one translation start site and
encodes a single functional protein product. However, according to current points of view on …
encodes a single functional protein product. However, according to current points of view on …
Discovery of human sORF-encoded polypeptides (SEPs) in cell lines and tissue
The existence of nonannotated protein-coding human short open reading frames (sORFs)
has been revealed through the direct detection of their sORF-encoded polypeptide (SEP) …
has been revealed through the direct detection of their sORF-encoded polypeptide (SEP) …
Diversity of preferred nucleotide sequences around the translation initiation codon in eukaryote genomes
Understanding regulatory mechanisms of protein synthesis in eukaryotes is essential for the
accurate annotation of genome sequences. Kozak reported that the nucleotide sequence …
accurate annotation of genome sequences. Kozak reported that the nucleotide sequence …
DeepCPP: a deep neural network based on nucleotide bias information and minimum distribution similarity feature selection for RNA coding potential prediction
The development of deep sequencing technologies has led to the discovery of novel
transcripts. Many in silico methods have been developed to assess the coding potential of …
transcripts. Many in silico methods have been developed to assess the coding potential of …
Translational control of eukaryotic gene expression
KVD Kelen, R Beyaert, D Inzé… - Critical reviews in …, 2009 - Taylor & Francis
Translational control mechanisms are, besides transcriptional control and mRNA stability,
the most determining for final protein levels. A large number of accessory factors that assist …
the most determining for final protein levels. A large number of accessory factors that assist …
Polymorphisms in E-cadherin (CDH1) result in a mis-localised cytoplasmic protein that is associated with Crohn's disease
Background: Patients with Crohn's disease have defects in intestinal epithelial permeability
that are inadequately explained by known inflammatory bowel disease (IBD) susceptibility …
that are inadequately explained by known inflammatory bowel disease (IBD) susceptibility …
A novel intracellular isoform of matrix metalloproteinase-2 induced by oxidative stress activates innate immunity
Background Experimental and clinical evidence has pinpointed a critical role for matrix
metalloproteinase-2 (MMP-2) in ischemic ventricular remodeling and systolic heart failure …
metalloproteinase-2 (MMP-2) in ischemic ventricular remodeling and systolic heart failure …
Distance-dependent inhibition of translation initiation by downstream out-of-frame AUGs is consistent with a Brownian ratchet process of ribosome scanning
K Li, J Kong, S Zhang, T Zhao, W Qian - Genome biology, 2022 - Springer
Background Eukaryotic ribosomes are widely presumed to scan mRNA for the AUG codon to
initiate translation in a strictly 5′–3′ movement (ie, strictly unidirectional scanning model) …
initiate translation in a strictly 5′–3′ movement (ie, strictly unidirectional scanning model) …
Alternative translation start sites are conserved in eukaryotic genomes
Alternative start AUG codons within a single transcript can contribute to diversity of the
proteome; however, their functional significance remains controversial. Here, we provide …
proteome; however, their functional significance remains controversial. Here, we provide …