[HTML][HTML] limma powers differential expression analyses for RNA-sequencing and microarray studies

ME Ritchie, B Phipson, DI Wu, Y Hu… - Nucleic acids …, 2015 - academic.oup.com
Abstract limma is an R/Bioconductor software package that provides an integrated solution
for analysing data from gene expression experiments. It contains rich features for handling …

Analyzing microarray gene expression data

GJ McLachlan, KA Do, C Ambroise - 2005 - books.google.com
A multi-discipline, hands-on guide to microarray analysis of biological processes Analyzing
Microarray Gene Expression Data provides a comprehensive review of available …

A systematic evaluation of normalization methods in quantitative label-free proteomics

T Välikangas, T Suomi, LL Elo - Briefings in bioinformatics, 2018 - academic.oup.com
To date, mass spectrometry (MS) data remain inherently biased as a result of reasons
ranging from sample handling to differences caused by the instrumentation. Normalization is …

Springer series in statistics

P Bickel, P Diggle, S Fienberg, U Gather, I Olkin… - Principles and Theory …, 2009 - Springer
The idea for this book came from the time the authors spent at the Statistics and Applied
Mathematical Sciences Institute (SAMSI) in Research Triangle Park in North Carolina …

Comparison of discrimination methods for the classification of tumors using gene expression data

S Dudoit, J Fridlyand, TP Speed - Journal of the American …, 2002 - Taylor & Francis
A reliable and precise classification of tumors is essential for successful diagnosis and
treatment of cancer. cDNA microarrays and high-density oligonucleotide chips are novel …

Normalization for cDNA microarray data: a robust composite method addressing single and multiple slide systematic variation

YH Yang, S Dudoit, P Luu, DM Lin, V Peng… - Nucleic acids …, 2002 - academic.oup.com
There are many sources of systematic variation in cDNA microarray experiments which
affect the measured gene expression levels (eg differences in labeling efficiency between …

Use of within-array replicate spots for assessing differential expression in microarray experiments

GK Smyth, J Michaud, HS Scott - Bioinformatics, 2005 - academic.oup.com
Motivation: Spotted arrays are often printed with probes in duplicate or triplicate, but current
methods for assessing differential expression are not able to make full use of the resulting …

Normalization of cDNA microarray data

GK Smyth, T Speed - Methods, 2003 - Elsevier
Normalization means to adjust microarray data for effects which arise from variation in the
technology rather than from biological differences between the RNA samples or between the …

[SÁCH][B] Henri Lefebvre: A critical introduction

A Merrifield - 2013 - books.google.com
Philosopher, sociologist and urban theorist, Henri Lefebvre is one of the great social
theorists of the twentieth century. This accessible and innovative introduction to the work of …

Multiple hypothesis testing in microarray experiments

S Dudoit, JP Shaffer, JC Boldrick - Statistical Science, 2003 - projecteuclid.org
DNA microarrays are part of a new and promising class of biotechnologies that allow the
monitoring of expression levels in cells for thousands of genes simultaneously. An important …