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Harnessing the power of RADseq for ecological and evolutionary genomics
High-throughput techniques based on restriction site-associated DNA sequencing (RADseq)
are enabling the low-cost discovery and genoty** of thousands of genetic markers for any …
are enabling the low-cost discovery and genoty** of thousands of genetic markers for any …
Stacks 2: Analytical methods for paired‐end sequencing improve RADseq‐based population genomics
For half a century population genetics studies have put type II restriction endonucleases to
work. Now, coupled with massively‐parallel, short‐read sequencing, the family of RAD …
work. Now, coupled with massively‐parallel, short‐read sequencing, the family of RAD …
From next-generation resequencing reads to a high-quality variant data set
Sequencing has revolutionized biology by permitting the analysis of genomic variation at an
unprecedented resolution. High-throughput sequencing is fast and inexpensive, making it …
unprecedented resolution. High-throughput sequencing is fast and inexpensive, making it …
These aren't the loci you'e looking for: Principles of effective SNP filtering for molecular ecologists
SJ O'Leary, JB Puritz, SC Willis, CM Hollenbeck… - 2018 - Wiley Online Library
Sequencing reduced‐representation libraries of restriction site‐associated DNA (RAD seq)
to identify single nucleotide polymorphisms (SNP s) is quickly becoming a standard …
to identify single nucleotide polymorphisms (SNP s) is quickly becoming a standard …
Conservation genomics of natural and managed populations: building a conceptual and practical framework
LM Benestan, AL Ferchaud, PA Hohenlohe, BA Garner… - 2016 - Wiley Online Library
The boom of massive parallel sequencing (MPS) technology and its applications in
conservation of natural and managed populations brings new opportunities and challenges …
conservation of natural and managed populations brings new opportunities and challenges …
[HTML][HTML] A phylogenomic supertree of birds
It has long been appreciated that analyses of genomic data (eg, whole genome sequencing
or sequence capture) have the potential to reveal the tree of life, but it remains challenging …
or sequence capture) have the potential to reveal the tree of life, but it remains challenging …
RAD cap: sequence capture of dual‐digest RAD seq libraries with identifiable duplicates and reduced missing data
Molecular ecologists seek to genotype hundreds to thousands of loci from hundreds to
thousands of individuals at minimal cost per sample. Current methods, such as restriction …
thousands of individuals at minimal cost per sample. Current methods, such as restriction …
Functional innovation promotes diversification of form in the evolution of an ultrafast trap-jaw mechanism in ants
Evolutionary innovations underlie the rise of diversity and complexity—the 2 long-term
trends in the history of life. How does natural selection redesign multiple interacting parts to …
trends in the history of life. How does natural selection redesign multiple interacting parts to …
On the causes, consequences, and avoidance of PCR duplicates: towards a theory of library complexity
Library preparation protocols for most sequencing technologies involve PCR amplification of
the template DNA, which open the possibility that a given template DNA molecule is …
the template DNA, which open the possibility that a given template DNA molecule is …
Museums are biobanks: unlocking the genetic potential of the three billion specimens in the world's biological collections
Highlights•Museum and herbarium collections store near inexhaustible genetic
resources.•We overview next-generation sequencing tools for the analysis of museum and …
resources.•We overview next-generation sequencing tools for the analysis of museum and …