Opportunities and challenges of using metagenomic data to bring uncultured microbes into cultivation
Although there is now an extensive understanding of the diversity of microbial life on earth
through culture-independent metagenomic DNA sequence analyses, the isolation and …
through culture-independent metagenomic DNA sequence analyses, the isolation and …
Fungal taxonomy and sequence-based nomenclature
The identification and proper naming of microfungi, in particular plant, animal and human
pathogens, remains challenging. Molecular identification is becoming the default approach …
pathogens, remains challenging. Molecular identification is becoming the default approach …
TYGS and LPSN: a database tandem for fast and reliable genome-based classification and nomenclature of prokaryotes
JP Meier-Kolthoff, JS Carbasse… - Nucleic acids …, 2022 - academic.oup.com
Microbial systematics is heavily influenced by genome-based methods and challenged by
an ever increasing number of taxon names and associated sequences in public data …
an ever increasing number of taxon names and associated sequences in public data …
SeqCode: a nomenclatural code for prokaryotes described from sequence data
Most prokaryotes are not available as pure cultures and therefore ineligible for naming
under the rules and recommendations of the International Code of Nomenclature of …
under the rules and recommendations of the International Code of Nomenclature of …
[HTML][HTML] Biosynthetic potential of the global ocean microbiome
Natural microbial communities are phylogenetically and metabolically diverse. In addition to
underexplored organismal groups, this diversity encompasses a rich discovery potential for …
underexplored organismal groups, this diversity encompasses a rich discovery potential for …
Multiple energy sources and metabolic strategies sustain microbial diversity in Antarctic desert soils
Numerous diverse microorganisms reside in the cold desert soils of continental Antarctica,
though we lack a holistic understanding of the metabolic processes that sustain them. Here …
though we lack a holistic understanding of the metabolic processes that sustain them. Here …
Scientific novelty beyond the experiment
Practical experiments drive important scientific discoveries in biology, but theory‐based
research studies also contribute novel—sometimes paradigm‐changing—findings. Here, we …
research studies also contribute novel—sometimes paradigm‐changing—findings. Here, we …
Genomes OnLine Database (GOLD) v. 8: overview and updates
S Mukherjee, D Stamatis, J Bertsch… - Nucleic acids …, 2021 - academic.oup.com
Abstract The Genomes OnLine Database (GOLD)(https://gold. jgi. doe. gov/) is a manually
curated, daily updated collection of genome projects and their metadata accumulated from …
curated, daily updated collection of genome projects and their metadata accumulated from …
Prokaryotic taxonomy and nomenclature in the age of big sequence data
The classification of life forms into a hierarchical system (taxonomy) and the application of
names to this hierarchy (nomenclature) is at a turning point in microbiology. The …
names to this hierarchy (nomenclature) is at a turning point in microbiology. The …
Verrucomicrobiota are specialist consumers of sulfated methyl pentoses during diatom blooms
LH Orellana, TB Francis, M Ferraro… - The ISME …, 2022 - academic.oup.com
Marine algae annually sequester petagrams of carbon dioxide into polysaccharides, which
are a central metabolic fuel for marine carbon cycling. Diatom microalgae produce sulfated …
are a central metabolic fuel for marine carbon cycling. Diatom microalgae produce sulfated …