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Multi-parent populations in crops: a toolbox integrating genomics and genetic map** with breeding
Crop populations derived from experimental crosses enable the genetic dissection of
complex traits and support modern plant breeding. Among these, multi-parent populations …
complex traits and support modern plant breeding. Among these, multi-parent populations …
Exploring and exploiting pan-genomics for crop improvement
Genetic variation ranging from single-nucleotide polymorphisms to large structural variants
(SVs) can cause variation of gene content among individuals within the same species. There …
(SVs) can cause variation of gene content among individuals within the same species. There …
A pan-genome of 69 Arabidopsis thaliana accessions reveals a conserved genome structure throughout the global species range
Q Lian, B Huettel, B Walkemeier, B Mayjonade… - Nature …, 2024 - nature.com
Although originally primarily a system for functional biology, Arabidopsis thaliana has, owing
to its broad geographical distribution and adaptation to diverse environments, developed …
to its broad geographical distribution and adaptation to diverse environments, developed …
SyRI: finding genomic rearrangements and local sequence differences from whole-genome assemblies
Genomic differences range from single nucleotide differences to complex structural
variations. Current methods typically annotate sequence differences ranging from SNPs to …
variations. Current methods typically annotate sequence differences ranging from SNPs to …
[HTML][HTML] Joint control of meiotic crossover patterning by the synaptonemal complex and HEI10 dosage
Meiotic crossovers are limited in number and are prevented from occurring close to each
other by crossover interference. In many species, crossover number is subject to sexual …
other by crossover interference. In many species, crossover number is subject to sexual …
High-quality de novo assembly of the apple genome and methylome dynamics of early fruit development
Using the latest sequencing and optical map** technologies, we have produced a high-
quality de novo assembly of the apple (Malus domestica Borkh.) genome. Repeat …
quality de novo assembly of the apple (Malus domestica Borkh.) genome. Repeat …
[BOK][B] Genetic management of fragmented animal and plant populations
One of the greatest unmet challenges in conservation biology is the genetic management of
fragmented populations of threatened animal and plant species. More than a million small …
fragmented populations of threatened animal and plant species. More than a million small …
The Peach v2. 0 release: high-resolution linkage map** and deep resequencing improve chromosome-scale assembly and contiguity
Background The availability of the peach genome sequence has fostered relevant research
in peach and related Prunus species enabling the identification of genes underlying …
in peach and related Prunus species enabling the identification of genes underlying …
Chromosome-level assemblies of multiple Arabidopsis genomes reveal hotspots of rearrangements with altered evolutionary dynamics
Despite hundreds of sequenced Arabidopsis genomes, very little is known about the degree
of genomic collinearity within single species, due to the low number of chromosome-level …
of genomic collinearity within single species, due to the low number of chromosome-level …
Extensive intraspecific gene order and gene structural variations in upland cotton cultivars
Z Yang, X Ge, Z Yang, W Qin, G Sun, Z Wang… - Nature …, 2019 - nature.com
Multiple cotton genomes (diploid and tetraploid) have been assembled. However, genomic
variations between cultivars of allotetraploid upland cotton (Gossypium hirsutum L.), the …
variations between cultivars of allotetraploid upland cotton (Gossypium hirsutum L.), the …