Multi-parent populations in crops: a toolbox integrating genomics and genetic map** with breeding

MF Scott, O Ladejobi, S Amer, AR Bentley, J Biernaskie… - Heredity, 2020 - nature.com
Crop populations derived from experimental crosses enable the genetic dissection of
complex traits and support modern plant breeding. Among these, multi-parent populations …

Exploring and exploiting pan-genomics for crop improvement

Y Tao, X Zhao, E Mace, R Henry, D Jordan - Molecular plant, 2019 - cell.com
Genetic variation ranging from single-nucleotide polymorphisms to large structural variants
(SVs) can cause variation of gene content among individuals within the same species. There …

A pan-genome of 69 Arabidopsis thaliana accessions reveals a conserved genome structure throughout the global species range

Q Lian, B Huettel, B Walkemeier, B Mayjonade… - Nature …, 2024 - nature.com
Although originally primarily a system for functional biology, Arabidopsis thaliana has, owing
to its broad geographical distribution and adaptation to diverse environments, developed …

SyRI: finding genomic rearrangements and local sequence differences from whole-genome assemblies

M Goel, H Sun, WB Jiao, K Schneeberger - Genome biology, 2019 - Springer
Genomic differences range from single nucleotide differences to complex structural
variations. Current methods typically annotate sequence differences ranging from SNPs to …

[HTML][HTML] Joint control of meiotic crossover patterning by the synaptonemal complex and HEI10 dosage

S Durand, Q Lian, J **g, M Ernst, M Grelon… - Nature …, 2022 - nature.com
Meiotic crossovers are limited in number and are prevented from occurring close to each
other by crossover interference. In many species, crossover number is subject to sexual …

High-quality de novo assembly of the apple genome and methylome dynamics of early fruit development

N Daccord, JM Celton, G Linsmith, C Becker… - Nature …, 2017 - nature.com
Using the latest sequencing and optical map** technologies, we have produced a high-
quality de novo assembly of the apple (Malus domestica Borkh.) genome. Repeat …

[BOK][B] Genetic management of fragmented animal and plant populations

R Frankham, JD Ballou, K Ralls, M Eldridge… - 2017 - books.google.com
One of the greatest unmet challenges in conservation biology is the genetic management of
fragmented populations of threatened animal and plant species. More than a million small …

The Peach v2. 0 release: high-resolution linkage map** and deep resequencing improve chromosome-scale assembly and contiguity

I Verde, J Jenkins, L Dondini, S Micali, G Pagliarani… - BMC genomics, 2017 - Springer
Background The availability of the peach genome sequence has fostered relevant research
in peach and related Prunus species enabling the identification of genes underlying …

Chromosome-level assemblies of multiple Arabidopsis genomes reveal hotspots of rearrangements with altered evolutionary dynamics

WB Jiao, K Schneeberger - Nature communications, 2020 - nature.com
Despite hundreds of sequenced Arabidopsis genomes, very little is known about the degree
of genomic collinearity within single species, due to the low number of chromosome-level …

Extensive intraspecific gene order and gene structural variations in upland cotton cultivars

Z Yang, X Ge, Z Yang, W Qin, G Sun, Z Wang… - Nature …, 2019 - nature.com
Multiple cotton genomes (diploid and tetraploid) have been assembled. However, genomic
variations between cultivars of allotetraploid upland cotton (Gossypium hirsutum L.), the …