Nonspecific binding—fundamental concepts and consequences for biosensing applications

A Frutiger, A Tanno, S Hwu, RF Tiefenauer… - Chemical …, 2021 - ACS Publications
Nature achieves differentiation of specific and nonspecific binding in molecular interactions
through precise control of biomolecules in space and time. Artificial systems such as …

Uncovering post-translational modification-associated protein–protein interactions

S Wang, AO Osgood, A Chatterjee - Current opinion in structural biology, 2022 - Elsevier
In living systems, the chemical space and functional repertoire of proteins are dramatically
expanded through the post-translational modification (PTM) of various amino acid residues …

Predicting protein–protein interactions from the molecular to the proteome level

O Keskin, N Tuncbag, A Gursoy - Chemical reviews, 2016 - ACS Publications
Identification of protein–protein interactions (PPIs) is at the center of molecular biology
considering the unquestionable role of proteins in cells. Combinatorial interactions result in …

On the binding affinity of macromolecular interactions: daring to ask why proteins interact

PL Kastritis, AMJJ Bonvin - Journal of The Royal Society …, 2013 - royalsocietypublishing.org
Interactions between proteins are orchestrated in a precise and time-dependent manner,
underlying cellular function. The binding affinity, defined as the strength of these …

Current status of community resources and priorities for weed genomics research

J Montgomery, S Morran, DR MacGregor, JS McElroy… - Genome biology, 2024 - Springer
Weeds are attractive models for basic and applied research due to their impacts on
agricultural systems and capacity to swiftly adapt in response to anthropogenic selection …

Metabolons, enzyme–enzyme assemblies that mediate substrate channeling, and their roles in plant metabolism

Y Zhang, AR Fernie - Plant Communications, 2021 - cell.com
Metabolons are transient multi-protein complexes of sequential enzymes that mediate
substrate channeling. They differ from multi-enzyme complexes in that they are dynamic …

Computer-aided antibody design

D Kuroda, H Shirai, MP Jacobson… - … engineering, design & …, 2012 - academic.oup.com
Recent clinical trials using antibodies with low toxicity and high efficiency have raised
expectations for the development of next-generation protein therapeutics. However, the …

[HTML][HTML] Mutations at protein-protein interfaces: Small changes over big surfaces have large impacts on human health

HC Jubb, AP Pandurangan, MA Turner… - Progress in biophysics …, 2017 - Elsevier
Many essential biological processes including cell regulation and signalling are mediated
through the assembly of protein complexes. Changes to protein-protein interaction (PPI) …

[HTML][HTML] Computational prediction of protein interfaces: A review of data driven methods

LC Xue, D Dobbs, AMJJ Bonvin, V Honavar - FEBS letters, 2015 - Elsevier
Reliably pinpointing which specific amino acid residues form the interface (s) between a
protein and its binding partner (s) is critical for understanding the structural and …

Isotype and glycoform selection for antibody therapeutics

R Jefferis - Archives of biochemistry and biophysics, 2012 - Elsevier
We live in a hostile environment but are protected by the innate and adaptive immune
system. A major component of the latter is mediated by antibody molecules that bind to …