Pseudogene-derived lncRNAs and their miRNA sponging mechanism in human cancer

W Lou, B Ding, P Fu - Frontiers in cell and developmental biology, 2020 - frontiersin.org
Pseudogenes, abundant in the human genome, are traditionally considered as non-
functional “junk genes.” However, recent studies have revealed that pseudogenes act as key …

On the immortality of television sets:“function” in the human genome according to the evolution-free gospel of ENCODE

D Graur, Y Zheng, N Price, RBR Azevedo… - Genome biology and …, 2013 - academic.oup.com
A recent slew of ENCyclopedia Of DNA Elements (ENCODE) Consortium publications,
specifically the article signed by all Consortium members, put forward the idea that more …

An evolutionary classification of genomic function

D Graur, Y Zheng, RBR Azevedo - Genome biology and …, 2015 - academic.oup.com
The pronouncements of the ENCODE Project Consortium regarding “junk DNA” exposed the
need for an evolutionary classification of genomic elements according to their selected-effect …

Deep transcriptome sequencing provides new insights into the structural and functional organization of the wheat genome

L **ault, F Choulet, A Alberti, N Glover, P Wincker… - Genome biology, 2015 - Springer
Background Because of its size, allohexaploid nature, and high repeat content, the bread
wheat genome is a good model to study the impact of the genome structure on gene …

dreamBase: DNA modification, RNA regulation and protein binding of expressed pseudogenes in human health and disease

LL Zheng, KR Zhou, S Liu, DY Zhang… - Nucleic Acids …, 2018 - academic.oup.com
Although thousands of pseudogenes have been annotated in the human genome, their
transcriptional regulation, expression profiles and functional mechanisms are largely …

Pseudogenes and their genome-wide prediction in plants

J **ao, MK Sekhwal, P Li, R Ragupathy… - International Journal of …, 2016 - mdpi.com
Pseudogenes are paralogs generated from ancestral functional genes (parents) during
genome evolution, which contain critical defects in their sequences, such as lacking a …

[HTML][HTML] A disparate role of RP11-424C20. 2/UHRF1 axis through control of tumor immune escape in liver hepatocellular carcinoma and thymoma

J Yang, Y Zhang, H Song - Aging (Albany NY), 2019 - ncbi.nlm.nih.gov
The immune system is critical in modulating cancer progression. Pseudogenes are a special
type of long non-coding RNAs that regulate different tumorigenic processes. However, the …

Unravelling the due importance of pseudogenes and their resurrection in plants

S Yadav, G Kalwan, S Meena, SS Gill… - Plant Physiology and …, 2023 - Elsevier
The complexities of a genome are underpinned to the vast expanses of the intergenic
region, which constitutes∼ 97–98% of the genome. This region is essentially composed of …

FTH1P3, a novel H-ferritin pseudogene transcriptionally active, is ubiquitously expressed and regulated during cell differentiation

M Di Sanzo, I Aversa, G Santamaria, M Gagliardi… - PloS one, 2016 - journals.plos.org
Ferritin, the major iron storage protein, performs its essential functions in the cytoplasm,
nucleus and mitochondria. The variable assembly of 24 subunits of the Heavy (H) and Light …

Genomic comparison of Trypanosoma conorhini and Trypanosoma rangeli to Trypanosoma cruzi strains of high and low virulence

KR Bradwell, VN Koparde, AV Matveyev, MG Serrano… - BMC genomics, 2018 - Springer
Abstract Background Trypanosoma conorhini and Trypanosoma rangeli, like Trypanosoma
cruzi, are kinetoplastid protist parasites of mammals displaying divergent hosts, geographic …