Oocytes maintain ROS-free mitochondrial metabolism by suppressing complex I

A Rodríguez-Nuevo, A Torres-Sanchez, JM Duran… - Nature, 2022 - nature.com
Oocytes form before birth and remain viable for several decades before fertilization.
Although poor oocyte quality accounts for most female fertility problems, little is known about …

Advances in mass spectrometry-based single cell analysis

S Lee, HM Vu, JH Lee, H Lim, MS Kim - Biology, 2023 - mdpi.com
Simple Summary Cell-to-cell variation exists within a population of the same cell type due to
stochastic gene and protein expression and environmental factors. Studying such cellular …

The proteomic landscape of genome-wide genetic perturbations

CB Messner, V Demichev, J Muenzner, SK Aulakh… - Cell, 2023 - cell.com
Functional genomic strategies have become fundamental for annotating gene function and
regulatory networks. Here, we combined functional genomics with proteomics by quantifying …

[HTML][HTML] Multibatch TMT reveals false positives, batch effects and missing values

A Brenes, J Hukelmann, D Bensaddek… - Molecular & Cellular …, 2019 - Elsevier
Multiplexing strategies for large-scale proteomic analyses have become increasingly
prevalent, tandem mass tags (TMT) in particular. Here we used a large iPSC proteomic …

Mass Spectrometry Structural Proteomics Enabled by Limited Proteolysis and Cross‐Linking

H Lu, Z Zhu, L Fields, H Zhang… - Mass Spectrometry …, 2024 - Wiley Online Library
The exploration of protein structure and function stands at the forefront of life science and
represents an ever‐expanding focus in the development of proteomics. As mass …

Proteome-wide evaluation of two common protein quantification methods

JD O'Connell, JA Paulo, JJ O'Brien… - Journal of proteome …, 2018 - ACS Publications
Proteomics experiments commonly aim to estimate and detect differential abundance across
all expressed proteins. Within this experimental design, some of the most challenging …

Highly multiplexed quantitative mass spectrometry analysis of ubiquitylomes

CM Rose, M Isasa, A Ordureau, MA Prado… - Cell systems, 2016 - cell.com
System-wide quantitative analysis of ubiquitylomes has proven to be a valuable tool for
elucidating targets and mechanisms of the ubiquitin-driven signaling systems, as well as …

A strategy to combine sample multiplexing with targeted proteomics assays for high-throughput protein signature characterization

BK Erickson, CM Rose, CR Braun, AR Erickson, J Knott… - Molecular cell, 2017 - cell.com
Targeted mass spectrometry assays for protein quantitation monitor peptide surrogates,
which are easily multiplexed to target many peptides in a single assay. However, these …

DUSP9 modulates DNA hypomethylation in female mouse pluripotent stem cells

J Choi, K Clement, AJ Huebner, J Webster, CM Rose… - Cell stem cell, 2017 - cell.com
Blastocyst-derived embryonic stem cells (ESCs) and gonad-derived embryonic germ cells
(EGCs) represent two classic types of pluripotent cell lines, yet their molecular equivalence …

Driver mutations dictate the immunologic landscape and response to checkpoint immunotherapy of glioblastoma

AT Yeo, R Shah, K Aliazis, R Pal, T Xu… - Cancer immunology …, 2023 - aacrjournals.org
The composition of the tumor immune microenvironment (TIME) is considered a key
determinant of patients' response to immunotherapy. The mechanisms underlying TIME …