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Prediction and estimation of effective population size
Effective population size (N e) is a key parameter in population genetics. It has important
applications in evolutionary biology, conservation genetics and plant and animal breeding …
applications in evolutionary biology, conservation genetics and plant and animal breeding …
Map** genes for complex traits in domestic animals and their use in breeding programmes
Genome-wide panels of SNPs have recently been used in domestic animal species to map
and identify genes for many traits and to select genetically desirable livestock. This has led …
and identify genes for many traits and to select genetically desirable livestock. This has led …
A beginner's guide to low‐coverage whole genome sequencing for population genomics
Low‐coverage whole genome sequencing (lcWGS) has emerged as a powerful and cost‐
effective approach for population genomic studies in both model and nonmodel species …
effective approach for population genomic studies in both model and nonmodel species …
Recent demographic history inferred by high-resolution analysis of linkage disequilibrium
Inferring changes in effective population size (N e) in the recent past is of special interest for
conservation of endangered species and for human history research. Current methods for …
conservation of endangered species and for human history research. Current methods for …
SNeP: a tool to estimate trends in recent effective population size trajectories using genome-wide SNP data
Effective population size (Ne) is a key population genetic parameter that describes the
amount of genetic drift in a population. Estimating Ne has been subject to much research …
amount of genetic drift in a population. Estimating Ne has been subject to much research …
Genome-wide analysis of the world's sheep breeds reveals high levels of historic mixture and strong recent selection
Through their domestication and subsequent selection, sheep have been adapted to thrive
in a diverse range of environments. To characterise the genetic consequence of both …
in a diverse range of environments. To characterise the genetic consequence of both …
Runs of homozygosity and population history in cattle
Background Runs of homozygosity (ROH) are contiguous lengths of homozygous genotypes
that are present in an individual due to parents transmitting identical haplotypes to their …
that are present in an individual due to parents transmitting identical haplotypes to their …
Relatedness in the post-genomic era: is it still useful?
Relatedness is a fundamental concept in genetics but is surprisingly hard to define in a
rigorous yet useful way. Traditional relatedness coefficients specify expected genome …
rigorous yet useful way. Traditional relatedness coefficients specify expected genome …
Increased accuracy of artificial selection by using the realized relationship matrix
Dense marker genotypes allow the construction of the realized relationship matrix between
individuals, with elements the realized proportion of the genome that is identical by descent …
individuals, with elements the realized proportion of the genome that is identical by descent …
Genetic structure in village dogs reveals a Central Asian domestication origin
LM Shannon, RH Boyko… - Proceedings of the …, 2015 - National Acad Sciences
Dogs were the first domesticated species, originating at least 15,000 y ago from Eurasian
gray wolves. Dogs today consist primarily of two specialized groups—a diverse set of nearly …
gray wolves. Dogs today consist primarily of two specialized groups—a diverse set of nearly …