Prediction and estimation of effective population size

J Wang, E Santiago, A Caballero - Heredity, 2016 - nature.com
Effective population size (N e) is a key parameter in population genetics. It has important
applications in evolutionary biology, conservation genetics and plant and animal breeding …

Map** genes for complex traits in domestic animals and their use in breeding programmes

ME Goddard, BJ Hayes - Nature Reviews Genetics, 2009 - nature.com
Genome-wide panels of SNPs have recently been used in domestic animal species to map
and identify genes for many traits and to select genetically desirable livestock. This has led …

A beginner's guide to low‐coverage whole genome sequencing for population genomics

RN Lou, A Jacobs, AP Wilder… - Molecular …, 2021 - Wiley Online Library
Low‐coverage whole genome sequencing (lcWGS) has emerged as a powerful and cost‐
effective approach for population genomic studies in both model and nonmodel species …

Recent demographic history inferred by high-resolution analysis of linkage disequilibrium

E Santiago, I Novo, AF Pardiñas… - Molecular Biology …, 2020 - academic.oup.com
Inferring changes in effective population size (N e) in the recent past is of special interest for
conservation of endangered species and for human history research. Current methods for …

SNeP: a tool to estimate trends in recent effective population size trajectories using genome-wide SNP data

M Barbato, P Orozco-terWengel, M Tapio… - Frontiers in …, 2015 - frontiersin.org
Effective population size (Ne) is a key population genetic parameter that describes the
amount of genetic drift in a population. Estimating Ne has been subject to much research …

Genome-wide analysis of the world's sheep breeds reveals high levels of historic mixture and strong recent selection

JW Kijas, JA Lenstra, B Hayes, S Boitard… - PLoS …, 2012 - journals.plos.org
Through their domestication and subsequent selection, sheep have been adapted to thrive
in a diverse range of environments. To characterise the genetic consequence of both …

Runs of homozygosity and population history in cattle

DC Purfield, DP Berry, S McParland, DG Bradley - BMC genetics, 2012 - Springer
Background Runs of homozygosity (ROH) are contiguous lengths of homozygous genotypes
that are present in an individual due to parents transmitting identical haplotypes to their …

Relatedness in the post-genomic era: is it still useful?

D Speed, DJ Balding - Nature Reviews Genetics, 2015 - nature.com
Relatedness is a fundamental concept in genetics but is surprisingly hard to define in a
rigorous yet useful way. Traditional relatedness coefficients specify expected genome …

Increased accuracy of artificial selection by using the realized relationship matrix

BJ Hayes, PM Visscher, ME Goddard - Genetics research, 2009 - cambridge.org
Dense marker genotypes allow the construction of the realized relationship matrix between
individuals, with elements the realized proportion of the genome that is identical by descent …

Genetic structure in village dogs reveals a Central Asian domestication origin

LM Shannon, RH Boyko… - Proceedings of the …, 2015 - National Acad Sciences
Dogs were the first domesticated species, originating at least 15,000 y ago from Eurasian
gray wolves. Dogs today consist primarily of two specialized groups—a diverse set of nearly …