Scientific large language models: A survey on biological & chemical domains

Q Zhang, K Ding, T Lv, X Wang, Q Yin, Y Zhang… - ACM Computing …, 2024 - dl.acm.org
Large Language Models (LLMs) have emerged as a transformative power in enhancing
natural language comprehension, representing a significant stride toward artificial general …

Network pharmacology approaches for research of Traditional Chinese Medicines

LI **ang, LIU Ziqi, L Jie, C Qian, LU **aoyan… - Chinese Journal of …, 2023 - Elsevier
Pharmacodynamics material basis and effective mechanisms are the two main issues to
decipher the mechnisms of action of Traditional Chinese medicines (TCMs) for the treatment …

Improving protein-protein interactions prediction accuracy using XGBoost feature selection and stacked ensemble classifier

C Chen, Q Zhang, B Yu, Z Yu, PJ Lawrence… - Computers in biology …, 2020 - Elsevier
Protein-protein interactions (PPIs) are involved with most cellular activities at the proteomic
level, making the study of PPIs necessary to comprehending any biological process …

A scored human protein–protein interaction network to catalyze genomic interpretation

T Li, R Wernersson, RB Hansen, H Horn, J Mercer… - Nature …, 2017 - nature.com
Genome-scale human protein–protein interaction networks are critical to understanding cell
biology and interpreting genomic data, but challenging to produce experimentally. Through …

A survey on computational models for predicting protein–protein interactions

L Hu, X Wang, YA Huang, P Hu… - Briefings in …, 2021 - academic.oup.com
Proteins interact with each other to play critical roles in many biological processes in cells.
Although promising, laboratory experiments usually suffer from the disadvantages of being …

Aquaculture industry prospective from gut microbiome of fish and shellfish: An overview

AD Diwan, SN Harke, Gopalkrishna… - Journal of animal …, 2022 - Wiley Online Library
The microbiome actually deals with micro‐organisms that are associated with indigenous
body parts and the entire gut system in all animals, including human beings. These …

The MIntAct project—IntAct as a common curation platform for 11 molecular interaction databases

S Orchard, M Ammari, B Aranda, L Breuza… - Nucleic acids …, 2014 - academic.oup.com
IntAct (freely available at http://www. ebi. ac. uk/intact) is an open-source, open data
molecular interaction database populated by data either curated from the literature or from …

Spectral clustering on protein-protein interaction networks via constructing affinity matrix using attributed graph embedding

K Berahmand, E Nasiri, Y Li - Computers in Biology and Medicine, 2021 - Elsevier
The identification of protein complexes in protein-protein interaction networks is the most
fundamental and essential problem for revealing the underlying mechanism of biological …

Traditional Chinese medicine network pharmacology: theory, methodology and application

LI Shao, B Zhang - Chinese journal of natural medicines, 2013 - Elsevier
Traditional Chinese medicine (TCM) has a long history of viewing an individual or patient as
a system with different statuses, and has accumulated numerous herbal formulae. The …

Protein‐protein interaction detection: methods and analysis

VS Rao, K Srinivas, GN Su**i… - International journal of …, 2014 - Wiley Online Library
Protein‐protein interaction plays key role in predicting the protein function of target protein
and drug ability of molecules. The majority of genes and proteins realize resulting …