The intricate balance between microRNA‐induced mRNA decay and translational repression
P Naeli, T Winter, AP Hackett, L Alboushi… - The FEBS …, 2023 - Wiley Online Library
Post‐transcriptional regulation of messenger RNAs (mRNAs)(ie, mechanisms that control
translation, stability and localization) is a critical focal point in spatiotemporal regulation of …
translation, stability and localization) is a critical focal point in spatiotemporal regulation of …
Structural and molecular mechanisms for the control of eukaryotic 5′–3′ mRNA decay
3′ RNA decay pathways are critical for quality control and regulation of gene expression.
Structural and biochemical studies have provided insights into the key nucleases that carry …
Structural and biochemical studies have provided insights into the key nucleases that carry …
DeepProSite: structure-aware protein binding site prediction using ESMFold and pretrained language model
Motivation Identifying the functional sites of a protein, such as the binding sites of proteins,
peptides, or other biological components, is crucial for understanding related biological …
peptides, or other biological components, is crucial for understanding related biological …
Predicting protein–peptide interactions: benchmarking deep learning techniques and a comparison with focused docking
The accurate prediction of protein structures achieved by deep learning (DL) methods is a
significant milestone and has deeply impacted structural biology. Shortly after its release …
significant milestone and has deeply impacted structural biology. Shortly after its release …
New insights into decap** enzymes and selective mRNA decay
E Grudzien‐Nogalska… - Wiley Interdisciplinary …, 2017 - Wiley Online Library
Removal of the 5′ end cap is a critical determinant controlling mRNA stability and efficient
gene expression. Removal of the cap is exquisitely controlled by multiple direct and indirect …
gene expression. Removal of the cap is exquisitely controlled by multiple direct and indirect …
Eukaryotic mRNA decap** activation
E Vidya, TF Duchaine - Frontiers in Genetics, 2022 - frontiersin.org
The 5′-terminal cap is a fundamental determinant of eukaryotic gene expression which
facilitates cap-dependent translation and protects mRNAs from exonucleolytic degradation …
facilitates cap-dependent translation and protects mRNAs from exonucleolytic degradation …
Messenger RNA 5′ NAD+ cap** is a dynamic regulatory epitranscriptome mark that is required for proper response to abscisic acid in Arabidopsis
Although eukaryotic messenger RNAs (mRNAs) normally possess a 5′ end N 7-methyl
guanosine (m 7 G) cap, a non-canonical 5′ nicotinamide adenine dinucleotide (NAD+) cap …
guanosine (m 7 G) cap, a non-canonical 5′ nicotinamide adenine dinucleotide (NAD+) cap …
The importance of non-accessible crosslinks and solvent accessible surface distance in modeling proteins with restraints from crosslinking mass spectrometry
JMA Bullock, J Schwab, K Thalassinos… - Molecular & Cellular …, 2016 - ASBMB
Crosslinking mass spectrometry (XL-MS) is becoming an increasingly popular technique for
modeling protein monomers and complexes. The distance restraints garnered from these …
modeling protein monomers and complexes. The distance restraints garnered from these …
Eukaryotic mRNA decap** factors: molecular mechanisms and activity
F He, A Jacobson - The FEBS journal, 2023 - Wiley Online Library
Decap** is the enzymatic removal of 5′ cap structures from mRNAs in eukaryotic cells.
Cap structures normally enhance mRNA translation and stability, and their excision commits …
Cap structures normally enhance mRNA translation and stability, and their excision commits …
Dcp2 C-terminal cis-binding elements control selective targeting of the decap** enzyme by forming distinct decap** complexes
F He, C Wu, A Jacobson - Elife, 2022 - elifesciences.org
A single Dcp1–Dcp2 decap** enzyme targets diverse classes of yeast mRNAs for
decap**-dependent 5′ to 3′ decay, but the molecular mechanisms controlling mRNA …
decap**-dependent 5′ to 3′ decay, but the molecular mechanisms controlling mRNA …