Metabolic pathways engineering for drought or/and heat tolerance in cereals

S Liu, T Zenda, Z Tian, Z Huang - Frontiers in Plant Science, 2023 - frontiersin.org
Drought (D) and heat (H) are the two major abiotic stresses hindering cereal crop growth
and productivity, either singly or in combination (D/+ H), by imposing various negative …

[HTML][HTML] Progress in plant genome sequencing

RJ Henry - Applied Biosciences, 2022 - mdpi.com
The genome sequence of any organism is key to understanding the biology and utility of that
organism. Plants have diverse, complex and sometimes very large nuclear genomes …

Pan-genome and phylogenomic analyses highlight Hevea species delineation and rubber trait evolution

Y Fang, X **ao, J Lin, Q Lin, J Wang, K Liu, Z Li… - Nature …, 2024 - nature.com
The para rubber tree (Hevea brasiliensis) is the world's sole commercial source of natural
rubber, a vital industrial raw material. However, the narrow genetic diversity of this crop …

Two long read-based genome assembly and annotation of polyploidy woody plants, Hibiscus syriacus L. using PacBio and Nanopore platforms

H Koo, GW Lee, SR Ko, S Go, SY Kwon, YM Kim… - Scientific Data, 2023 - nature.com
Improvements in long read DNA sequencing and related techniques facilitated the
generation of complex eukaryotic genomes. Despite these advances, the quality of …

An improved Nicotiana benthamiana bioproduction chassis provides novel insights into nicotine biosynthesis

K Vollheyde, QM Dudley, T Yang, MT Oz… - New …, 2023 - Wiley Online Library
The model plant Nicotiana benthamiana is an increasingly attractive organism for the
production of high‐value, biologically active molecules. However, N. benthamiana …

Welcome to the big leaves: Best practices for improving genome annotation in non‐model plant genomes

VS Vuruputoor, D Monyak, KC Fetter… - Applications in Plant …, 2023 - Wiley Online Library
Premise Robust standards to evaluate quality and completeness are lacking in eukaryotic
structural genome annotation, as genome annotation software is developed using model …

Highly accurate long reads are crucial for realizing the potential of biodiversity genomics

S Hotaling, ER Wilcox, J Heckenhauer, RJ Stewart… - BMC genomics, 2023 - Springer
Background Generating the most contiguous, accurate genome assemblies given available
sequencing technologies is a long-standing challenge in genome science. With the rise of …

Chromosome-scale genome assembly and annotation of Paspalum notatum Flüggé var. saurae

JM Vega, M Podio, J Orjuela, LA Siena, SC Pessino… - Scientific Data, 2024 - nature.com
Paspalum notatum Flüggé is an economically important subtropical fodder grass that is
widely used in the Americas. Here, we report a new chromosome-scale genome assembly …

[HTML][HTML] Using the next-generation sequencing approach for the discovery and characterization of molecular plant markers

B Panahi, HM Jalaly, R Hamid - Current Plant Biology, 2024 - Elsevier
Crop development is critical to meeting the world's growing food needs, especially in light of
the challenges posed by climate change and population growth. Molecular markers (MM) …

Balancing read length and sequencing depth: Optimizing Nanopore long‐read sequencing for monocots with an emphasis on the Liliales

GY De La Cerda, JB Landis, E Eifler… - Applications in Plant …, 2023 - Wiley Online Library
Premise We present approaches used to generate long‐read Nanopore sequencing reads
for the Liliales and demonstrate how modifications to standard protocols directly impact read …