Interactions between bacterial and phage communities in natural environments

A Chevallereau, BJ Pons, S van Houte… - Nature Reviews …, 2022 - nature.com
We commonly acknowledge that bacterial viruses (phages) shape the composition and
evolution of bacterial communities in nature and therefore have important roles in ecosystem …

The gut microbiota and its biogeography

G McCallum, C Tropini - Nature Reviews Microbiology, 2024 - nature.com
Biogeography is the study of species distribution and diversity within an ecosystem and is at
the core of how we understand ecosystem dynamics and interactions at the macroscale. In …

Mutualistic interplay between bacteriophages and bacteria in the human gut

AN Shkoporov, CJ Turkington, C Hill - Nature Reviews Microbiology, 2022 - nature.com
Bacteriophages (phages) are often described as obligate predators of their bacterial hosts,
and phage predation is one of the leading forces controlling the density and distribution of …

[HTML][HTML] Microbiome-based interventions to modulate gut ecology and the immune system

TCA Hitch, LJ Hall, SK Walsh, GE Leventhal, E Slack… - Mucosal …, 2022 - Elsevier
The gut microbiome lies at the intersection between the environment and the host, with the
ability to modify host responses to disease-relevant exposures and stimuli. This is evident in …

Prediction of strain level phage–host interactions across the Escherichia genus using only genomic information

B Gaborieau, H Vaysset, F Tesson, I Charachon… - Nature …, 2024 - nature.com
Predicting bacteriophage infection of specific bacterial strains promises advancements in
phage therapy and microbial ecology. Whether the dynamics of well-established phage …

Examining the healthy human microbiome concept

R Joos, K Boucher, A Lavelle, M Arumugam… - Nature Reviews …, 2024 - nature.com
Human microbiomes are essential to health throughout the lifespan and are increasingly
recognized and studied for their roles in metabolic, immunological and neurological …

Gut virome profiling identifies a widespread bacteriophage family associated with metabolic syndrome

PA de Jonge, K Wortelboer, TPM Scheithauer… - Nature …, 2022 - nature.com
There is significant interest in altering the course of cardiometabolic disease development
via gut microbiomes. Nevertheless, the highly abundant phage members of the complex gut …

[HTML][HTML] Anatomy promotes neutral coexistence of strains in the human skin microbiome

A Conwill, AC Kuan, R Damerla, AJ Poret, JS Baker… - Cell Host & Microbe, 2022 - cell.com
What enables strains of the same species to coexist in a microbiome? Here, we investigate
whether host anatomy can explain strain co-residence of Cutibacterium acnes, the most …

Viral biogeography of the mammalian gut and parenchymal organs

AN Shkoporov, SR Stockdale, A Lavelle… - Nature …, 2022 - nature.com
The mammalian virome has been linked to health and disease but our understanding of how
it is structured along the longitudinal axis of the mammalian gastrointestinal tract (GIT) and …

Understanding the impacts of bacteriophage viruses: from laboratory evolution to natural ecosystems

B Koskella, CA Hernandez… - Annual Review of …, 2022 - annualreviews.org
Viruses of bacteria (bacteriophages or phage) have broad effects on bacterial ecology and
evolution in nature that mediate microbial interactions, shape bacterial diversity, and …