Global analysis of patterns of gene expression during Drosophilaembryogenesis

P Tomancak, BP Berman, A Beaton, R Weiszmann… - Genome biology, 2007 - Springer
Background Cell and tissue specific gene expression is a defining feature of embryonic
development in multi-cellular organisms. However, the range of gene expression patterns …

Generalized linear discriminant analysis: a unified framework and efficient model selection

S Ji, J Ye - IEEE Transactions on Neural Networks, 2008 - ieeexplore.ieee.org
High-dimensional data are common in many domains, and dimensionality reduction is the
key to cope with the curse-of-dimensionality. Linear discriminant analysis (LDA) is a well …

[Књига][B] Multi-label dimensionality reduction

L Sun, S Ji, J Ye - 2013 - books.google.com
Similar to other data mining and machine learning tasks, multi-label learning suffers from
dimensionality. An effective way to mitigate this problem is through dimensionality reduction …

[PDF][PDF] Multi-class Discriminant Kernel Learning via Convex Programming.

J Ye, S Ji, J Chen - Journal of Machine Learning Research, 2008 - jmlr.org
Regularized kernel discriminant analysis (RKDA) performs linear discriminant analysis in
the feature space via the kernel trick. Its performance depends on the selection of kernels. In …

Segregation of spermatozoa within sperm storage tubules of fowl and turkey hens

LM King, JP Brillard, WM Garrett, MR Bakst… - …, 2002 - rep.bioscientifica.com
Sertoli cells and germ cells are separated from the interstitial blood capillaries by an
extracellular matrix and the peritubular cells, which constitute a barrier to the movement of …

[PDF][PDF] A small set of extra-embryonic genes defines a new landmark for bovine embryo staging

SA Degrelle, KA Le Cao, Y Heyman, RE Everts… - Reproduction, 2011 - Citeseer
Axis specification in mouse is determined by a sequence of reciprocal interactions between
embryonic and extra-embryonic tissues so that a few extra-embryonic genes appear as …

A bag-of-words approach for Drosophila gene expression pattern annotation

S Ji, YX Li, ZH Zhou, S Kumar, J Ye - BMC bioinformatics, 2009 - Springer
Background Drosophila gene expression pattern images document the spatiotemporal
dynamics of gene expression during embryogenesis. A comparative analysis of these …

SPEX2: automated concise extraction of spatial gene expression patterns from Fly embryo ISH images

K Puniyani, C Faloutsos, EP **ng - Bioinformatics, 2010 - academic.oup.com
Motivation: Microarray profiling of mRNA abundance is often ill suited for temporal–spatial
analysis of gene expressions in multicellular organisms such as Drosophila. Recent …

Automated annotation of Drosophila gene expression patterns using a controlled vocabulary

S Ji, L Sun, R **, S Kumar, J Ye - Bioinformatics, 2008 - academic.oup.com
Motivation: Regulation of gene expression in space and time directs its localization to a
specific subset of cells during development. Systematic determination of the spatiotemporal …

Drosophila gene expression pattern annotation using sparse features and term-term interactions

S Ji, L Yuan, YX Li, ZH Zhou, S Kumar… - Proceedings of the 15th …, 2009 - dl.acm.org
The Drosophila gene expression pattern images document the spatial and temporal
dynamics of gene expression and they are valuable tools for explicating the gene functions …