Global genetic diversity status and trends: towards a suite of Essential Biodiversity Variables (EBVs) for genetic composition

S Hoban, FI Archer, LD Bertola, JG Bragg… - Biological …, 2022 - Wiley Online Library
Biodiversity underlies ecosystem resilience, ecosystem function, sustainable economies,
and human well‐being. Understanding how biodiversity sustains ecosystems under …

Practical application of the linkage disequilibrium method for estimating contemporary effective population size: A review

RS Waples - Molecular Ecology Resources, 2024 - Wiley Online Library
The method to estimate contemporary effective population size (N e) based on patterns of
linkage disequilibrium (LD) at unlinked loci has been widely applied to natural and …

Impact of population structure in the estimation of recent historical effective population size by the software GONE

I Novo, P Ordás, N Moraga, E Santiago… - Genetics Selection …, 2023 - Springer
Background Effective population size (N e) is a crucial parameter in conservation genetics
and animal breeding. A recent method, implemented by the software GONE, has been …

Low‐coverage sequencing and Wahlund effect severely bias estimates of inbreeding, heterozygosity and effective population size in North American wolves

M Kardos, RS Waples - Molecular Ecology, 2024 - Wiley Online Library
Abstract vonHoldt et al.((2024), Molecular Ecology, 33, e17231)(vH24) used low‐coverage
(average~ 7X read depth) restriction site‐associated DNA sequence data to estimate …

The reduction of genetic diversity in threatened vertebrates and new recommendations regarding IUCN conservation rankings

JR Willoughby, M Sundaram, BK Wijayawardena… - Biological …, 2015 - Elsevier
Genetic diversity is necessary for evolutionary response to changing environmental
conditions such as those facing many threatened and endangered species. To investigate …

The signatures of Anthropocene defaunation: cascading effects of the seed dispersal collapse

N Pérez-Méndez, P Jordano, C García, A Valido - Scientific reports, 2016 - nature.com
Anthropogenic activity is driving population declines and extinctions of large-bodied, fruit-
eating animals worldwide. Loss of these frugivores is expected to trigger negative cascading …

Global assessment of effective population sizes: Consistent taxonomic differences in meeting the 50/500 rule

SH Clarke, ER Lawrence, JM Matte… - Molecular …, 2024 - Wiley Online Library
Effective population size (N e) is a particularly useful metric for conservation as it affects
genetic drift, inbreeding and adaptive potential within populations. Current guidelines …

Evaluating methods for estimating local effective population size with and without migration

KJ Gilbert, MC Whitlock - Evolution, 2015 - academic.oup.com
Effective population size is a fundamental parameter in population genetics, evolutionary
biology, and conservation biology, yet its estimation can be fraught with difficulties. Several …

Reproductive resilience: A paradigm shift in understanding spawner‐recruit systems in exploited marine fish

S Lowerre‐Barbieri, G DeCelles, P Pepin… - Fish and …, 2017 - Wiley Online Library
A close relationship between adult abundance and stock productivity may not exist for many
marine fish stocks, resulting in concern that the management goal of maximum sustainable …

Space is the place: effects of continuous spatial structure on analysis of population genetic data

CJ Battey, PL Ralph, AD Kern - Genetics, 2020 - academic.oup.com
Real geography is continuous, but standard models in population genetics are based on
discrete, well-mixed populations. As a result, many methods of analyzing genetic data …