Metabolic and biogeochemical consequences of viral infection in aquatic ecosystems

AE Zimmerman, C Howard-Varona… - Nature Reviews …, 2020 - nature.com
Ecosystems are controlled by 'bottom-up'(resources) and 'top-down'(predation) forces. Viral
infection is now recognized as a ubiquitous top-down control of microbial growth across …

The human gut phageome: origins and roles in the human gut microbiome

EM Townsend, L Kelly, G Muscatt, JD Box… - Frontiers in cellular …, 2021 - frontiersin.org
The investigation of the microbial populations of the human body, known as the microbiome,
has led to a revolutionary field of science, and understanding of its impacts on human …

Potential auxiliary metabolic capabilities and activities reveal biochemical impacts of viruses in municipal wastewater treatment plants

L Yuan, F Ju - Environmental Science & Technology, 2023 - ACS Publications
Viruses influence biogeochemical cycles in oceans, freshwater, soil, and human gut through
infection and by modulating virocell metabolism through virus-encoded auxiliary metabolic …

The OceanDNA MAG catalog contains over 50,000 prokaryotic genomes originated from various marine environments

Y Nishimura, S Yoshizawa - Scientific Data, 2022 - nature.com
Marine microorganisms are immensely diverse and play fundamental roles in global
geochemical cycling. Recent metagenome-assembled genome studies, with particular …

Minnesota peat viromes reveal terrestrial and aquatic niche partitioning for local and global viral populations

AM Ter Horst, C Santos-Medellín, JW Sorensen… - Microbiome, 2021 - Springer
Background Peatlands are expected to experience sustained yet fluctuating higher
temperatures due to climate change, leading to increased microbial activity and greenhouse …

Moisture modulates soil reservoirs of active DNA and RNA viruses

R Wu, MR Davison, Y Gao, CD Nicora… - Communications …, 2021 - nature.com
Soil is known to harbor viruses, but the majority are uncharacterized and their responses to
environmental changes are unknown. Here, we used a multi-omics approach …

[HTML][HTML] Coming-of-age characterization of soil viruses: a user's guide to virus isolation, detection within metagenomes, and viromics

G Trubl, P Hyman, S Roux, ST Abedon - Soil Systems, 2020 - mdpi.com
The study of soil viruses, though not new, has languished relative to the study of marine
viruses. This is particularly due to challenges associated with separating virions from …

Evaluating and improving small subunit rRNA PCR primer coverage for bacteria, archaea, and eukaryotes using metagenomes from global ocean surveys

J McNichol, PM Berube, SJ Biller, JA Fuhrman - Msystems, 2021 - journals.asm.org
Small subunit rRNA (SSU rRNA) amplicon sequencing can quantitatively and
comprehensively profile natural microbiomes, representing a critically important tool for …

Microbial ecology of oxygen minimum zones amidst ocean deoxygenation

AM Long, SK Jurgensen, AR Petchel… - Frontiers in …, 2021 - frontiersin.org
Oxygen minimum zones (OMZs) have substantial effects on the global ecology and
biogeochemical processes of marine microbes. However, the diversity and activity of OMZ …

Integrating viral metagenomics into an ecological framework

P Sommers, A Chatterjee, A Varsani… - Annual review of …, 2021 - annualreviews.org
Viral metagenomics has expanded our knowledge of the ecology of uncultured viruses,
within both environmental (eg, terrestrial and aquatic) and host-associated (eg, plants and …