Molecular determinants of condensate composition

AS Holehouse, S Alberti - Molecular cell, 2025 - cell.com
Cells use membraneless compartments to organize their interiors, and recent research has
begun to uncover the molecular principles underlying their assembly. Here, we explore how …

Multiscale computational modeling techniques in study and design of 2D materials: recent advances, challenges, and opportunities

MA Zaeem, S Thomas, S Kavousi, N Zhang… - 2D …, 2024 - iopscience.iop.org
This article provides an overview of recent advances, challenges, and opportunities in
multiscale computational modeling techniques for study and design of two-dimensional (2D) …

From electrons to phase diagrams with machine learning potentials using pyiron based automated workflows

S Menon, Y Lysogorskiy, ALM Knoll… - npj Computational …, 2024 - nature.com
We present a comprehensive and user-friendly framework built upon the pyiron integrated
development environment (IDE), enabling researchers to perform the entire Machine …

[HTML][HTML] ænet-PyTorch: a GPU-supported implementation for machine learning atomic potentials training

J López-Zorrilla, XM Aretxabaleta, IW Yeu… - The Journal of …, 2023 - pubs.aip.org
In this work, we present ænet-PyTorch, a PyTorch-based implementation for training artificial
neural network-based machine learning interatomic potentials. Developed as an extension …

FIREBALL: A tool to fit protein phase diagrams based on mean-field theories for polymer solutions

M Farag, AS Holehouse, X Zeng, RV Pappu - Biophysical Journal, 2023 - cell.com
Biomolecular condensates form via phase transitions of condensate-specific
biomacromolecules. Intrinsically disordered regions featuring the appropriate sequence …

Aromatic and arginine content drives multiphasic condensation of protein-RNA mixtures

PY Chew, JA Joseph, R Collepardo-Guevara… - Biophysical …, 2024 - cell.com
Multiphasic architectures are found ubiquitously in biomolecular condensates and are
thought to have important implications for the organization of multiple chemical reactions …

[HTML][HTML] First-principles prediction of the Co–Al phase diagram including configurational, vibrational and magnetic contributions

W Shao, H Hou, S Liu, J LLorca - Journal of Materials Research and …, 2024 - Elsevier
Co-based superalloys have attracted attention to replace Ni-based superalloys in high
temperature structural applications because of their higher melting temperature and …

Co/Bi2Te3 interfacial reactions and Bi-Co-Te phase equilibria

JR Chang, S Chen, HC Yang, CH Ho - Journal of the Taiwan Institute of …, 2024 - Elsevier
Abstract Background Bi 2 Te 3 is the most frequently used thermoelectric compound, while
Co exhibits promise as a barrier layer candidate. To provide fundamental information, the Bi …

Deep eutectic solvents as green solvents for material preparation

D Yu, D Jiang, Z Xue, T Mu - Green Chemistry, 2024 - pubs.rsc.org
The concept of sustainability has progressively evolved into a consensus for achieving long-
term development, and the significance of solvents in regard of green chemistry and …

[HTML][HTML] A streamlined molecular-dynamics workflow for computing solubilities of molecular and ionic crystals

A Reinhardt, PY Chew, B Cheng - The Journal of Chemical Physics, 2023 - pubs.aip.org
Computing the solubility of crystals in a solvent using atomistic simulations is notoriously
challenging due to the complexities and convergence issues associated with free-energy …