Graph neural networks for materials science and chemistry

P Reiser, M Neubert, A Eberhard, L Torresi… - Communications …, 2022 - nature.com
Abstract Machine learning plays an increasingly important role in many areas of chemistry
and materials science, being used to predict materials properties, accelerate simulations …

[HTML][HTML] A compact review of molecular property prediction with graph neural networks

O Wieder, S Kohlbacher, M Kuenemann… - Drug Discovery Today …, 2020 - Elsevier
As graph neural networks are becoming more and more powerful and useful in the field of
drug discovery, many pharmaceutical companies are getting interested in utilizing these …

Graph representation learning in bioinformatics: trends, methods and applications

HC Yi, ZH You, DS Huang… - Briefings in …, 2022 - academic.oup.com
Graph is a natural data structure for describing complex systems, which contains a set of
objects and relationships. Ubiquitous real-life biomedical problems can be modeled as …

Benchmarking machine learning models for polymer informatics: an example of glass transition temperature

L Tao, V Varshney, Y Li - Journal of Chemical Information and …, 2021 - ACS Publications
In the field of polymer informatics, utilizing machine learning (ML) techniques to evaluate the
glass transition temperature T g and other properties of polymers has attracted extensive …

Artificial intelligence in drug discovery: applications and techniques

J Deng, Z Yang, I Ojima, D Samaras… - Briefings in …, 2022 - academic.oup.com
Artificial intelligence (AI) has been transforming the practice of drug discovery in the past
decade. Various AI techniques have been used in many drug discovery applications, such …

An end-to-end heterogeneous graph representation learning-based framework for drug–target interaction prediction

J Peng, Y Wang, J Guan, J Li, R Han… - Briefings in …, 2021 - academic.oup.com
Accurately identifying potential drug–target interactions (DTIs) is a key step in drug
discovery. Although many related experimental studies have been carried out for identifying …

When physics meets machine learning: A survey of physics-informed machine learning

C Meng, S Seo, D Cao, S Griesemer, Y Liu - arxiv preprint arxiv …, 2022 - arxiv.org
Physics-informed machine learning (PIML), referring to the combination of prior knowledge
of physics, which is the high level abstraction of natural phenomenons and human …

Machine learning of reaction properties via learned representations of the condensed graph of reaction

E Heid, WH Green - Journal of Chemical Information and …, 2021 - ACS Publications
The estimation of chemical reaction properties such as activation energies, rates, or yields is
a central topic of computational chemistry. In contrast to molecular properties, where …

An improved GNN using dynamic graph embedding mechanism: a novel end-to-end framework for rolling bearing fault diagnosis under variable working conditions

Z Yu, C Zhang, C Deng - Mechanical Systems and Signal Processing, 2023 - Elsevier
Traditional deep learning (DL)-based rolling bearing fault diagnosis methods usually use
signals collected under specific working condition to train the diagnosis models. This may …

A self-attention based message passing neural network for predicting molecular lipophilicity and aqueous solubility

B Tang, ST Kramer, M Fang, Y Qiu, Z Wu… - Journal of …, 2020 - Springer
Efficient and accurate prediction of molecular properties, such as lipophilicity and solubility,
is highly desirable for rational compound design in chemical and pharmaceutical industries …