Practical application of the linkage disequilibrium method for estimating contemporary effective population size: A review

RS Waples - Molecular Ecology Resources, 2024 - Wiley Online Library
The method to estimate contemporary effective population size (N e) based on patterns of
linkage disequilibrium (LD) at unlinked loci has been widely applied to natural and …

Challenges in analysis and interpretation of microsatellite data for population genetic studies

AI Putman, I Carbone - Ecology and evolution, 2014 - Wiley Online Library
Advancing technologies have facilitated the ever‐widening application of genetic markers
such as microsatellites into new systems and research questions in biology. In light of the …

A beginner's guide to low‐coverage whole genome sequencing for population genomics

RN Lou, A Jacobs, AP Wilder… - Molecular …, 2021 - Wiley Online Library
Low‐coverage whole genome sequencing (lcWGS) has emerged as a powerful and cost‐
effective approach for population genomic studies in both model and nonmodel species …

NeEstimator v2: re‐implementation of software for the estimation of contemporary effective population size (Ne) from genetic data

C Do, RS Waples, D Peel, GM Macbeth… - Molecular ecology …, 2014 - Wiley Online Library
NeEstimator v2 is a completely revised and updated implementation of software that
produces estimates of contemporary effective population size, using several different …

Genetics and the conservation of natural populations: allozymes to genomes

FW Allendorf - 2017 - Wiley Online Library
I consider how the study of genetic variation has influenced efforts to conserve natural
populations over the last 50 years. Studies with allozymes in the 1970s provided the first …

SNeP: a tool to estimate trends in recent effective population size trajectories using genome-wide SNP data

M Barbato, P Orozco-terWengel, M Tapio… - Frontiers in …, 2015 - frontiersin.org
Effective population size (Ne) is a key population genetic parameter that describes the
amount of genetic drift in a population. Estimating Ne has been subject to much research …

Revisiting adaptive potential, population size, and conservation

AA Hoffmann, CM Sgrò, TN Kristensen - Trends in Ecology & Evolution, 2017 - cell.com
Additive genetic variance (VA) reflects the potential for evolutionary shifts and can be low for
some traits or populations. High VA is critical for the conservation of threatened species …

Effects of overlap** generations on linkage disequilibrium estimates of effective population size

RS Waples, T Antao, G Luikart - Genetics, 2014 - academic.oup.com
Use of single-sample genetic methods to estimate effective population size has skyrocketed
in recent years. Although the underlying models assume discrete generations, they are …

Comparing RADseq and microsatellites for estimating genetic diversity and relatedness—Implications for brown trout conservation

A Lemopoulos, JM Prokkola… - Ecology and …, 2019 - Wiley Online Library
The conservation and management of endangered species requires information on their
genetic diversity, relatedness and population structure. The main genetic markers applied …

Eutrophication causes speciation reversal in whitefish adaptive radiations

P Vonlanthen, D Bittner, AG Hudson, KA Young… - Nature, 2012 - nature.com
Species diversity can be lost through two different but potentially interacting extinction
processes: demographic decline and speciation reversal through introgressive …