Practical application of the linkage disequilibrium method for estimating contemporary effective population size: A review
RS Waples - Molecular Ecology Resources, 2024 - Wiley Online Library
The method to estimate contemporary effective population size (N e) based on patterns of
linkage disequilibrium (LD) at unlinked loci has been widely applied to natural and …
linkage disequilibrium (LD) at unlinked loci has been widely applied to natural and …
Challenges in analysis and interpretation of microsatellite data for population genetic studies
Advancing technologies have facilitated the ever‐widening application of genetic markers
such as microsatellites into new systems and research questions in biology. In light of the …
such as microsatellites into new systems and research questions in biology. In light of the …
A beginner's guide to low‐coverage whole genome sequencing for population genomics
Low‐coverage whole genome sequencing (lcWGS) has emerged as a powerful and cost‐
effective approach for population genomic studies in both model and nonmodel species …
effective approach for population genomic studies in both model and nonmodel species …
NeEstimator v2: re‐implementation of software for the estimation of contemporary effective population size (Ne) from genetic data
NeEstimator v2 is a completely revised and updated implementation of software that
produces estimates of contemporary effective population size, using several different …
produces estimates of contemporary effective population size, using several different …
Genetics and the conservation of natural populations: allozymes to genomes
FW Allendorf - 2017 - Wiley Online Library
I consider how the study of genetic variation has influenced efforts to conserve natural
populations over the last 50 years. Studies with allozymes in the 1970s provided the first …
populations over the last 50 years. Studies with allozymes in the 1970s provided the first …
SNeP: a tool to estimate trends in recent effective population size trajectories using genome-wide SNP data
Effective population size (Ne) is a key population genetic parameter that describes the
amount of genetic drift in a population. Estimating Ne has been subject to much research …
amount of genetic drift in a population. Estimating Ne has been subject to much research …
Revisiting adaptive potential, population size, and conservation
Additive genetic variance (VA) reflects the potential for evolutionary shifts and can be low for
some traits or populations. High VA is critical for the conservation of threatened species …
some traits or populations. High VA is critical for the conservation of threatened species …
Effects of overlap** generations on linkage disequilibrium estimates of effective population size
Use of single-sample genetic methods to estimate effective population size has skyrocketed
in recent years. Although the underlying models assume discrete generations, they are …
in recent years. Although the underlying models assume discrete generations, they are …
Comparing RADseq and microsatellites for estimating genetic diversity and relatedness—Implications for brown trout conservation
The conservation and management of endangered species requires information on their
genetic diversity, relatedness and population structure. The main genetic markers applied …
genetic diversity, relatedness and population structure. The main genetic markers applied …
Eutrophication causes speciation reversal in whitefish adaptive radiations
Species diversity can be lost through two different but potentially interacting extinction
processes: demographic decline and speciation reversal through introgressive …
processes: demographic decline and speciation reversal through introgressive …