Comparative genomics and molecular dynamics of DNA repeats in eukaryotes

GF Richard, A Kerrest, B Dujon - Microbiology and molecular …, 2008‏ - journals.asm.org
Repeated elements can be widely abundant in eukaryotic genomes, composing more than
50% of the human genome, for example. It is possible to classify repeated sequences into …

The dynamism of transposon methylation for plant development and stress adaptation

M Ramakrishnan, L Satish, R Kalendar… - International Journal of …, 2021‏ - mdpi.com
Plant development processes are regulated by epigenetic alterations that shape nuclear
structure, gene expression, and phenotypic plasticity; these alterations can provide the plant …

[HTML][HTML] FastPCR: An in silico tool for fast primer and probe design and advanced sequence analysis

R Kalendar, B Khassenov, Y Ramankulov… - Genomics, 2017‏ - Elsevier
Polymerase chain reaction (PCR) is one of the most important laboratory techniques used in
molecular biology, genetics and molecular diagnostics. The success of a PCR-based …

iPBS: a universal method for DNA fingerprinting and retrotransposon isolation

R Kalendar, K Antonius, P Smýkal… - Theoretical and Applied …, 2010‏ - Springer
Molecular markers are essential in plant and animal breeding and biodiversity applications,
in human forensics, and for map-based cloning of genes. The long terminal repeat (LTR) …

[PDF][PDF] FastPCR software for PCR primer and probe design and repeat search

R Kalendar, D Lee, AH Schulman - Genes, genomes and …, 2009‏ - researchgate.net
Reproducible and target-specific polymerase chain reaction (PCR) amplification relies on
several interrelated factors of which primer design is central. Here, we describe new free …

Structural and sequence diversity of eukaryotic transposable elements

KK Kojima - Genes & Genetic Systems, 2019‏ - jstage.jst.go.jp
The majority of eukaryotic genomes contain a large fraction of repetitive sequences that
primarily originate from transpositional bursts of transposable elements (TEs). Repbase …

The dynamic interplay between ribosomal DNA and transposable elements: a perspective from genomics and cytogenetics

S Garcia, A Kovarik, S Maiwald, L Mann… - Molecular Biology …, 2024‏ - academic.oup.com
Although both are salient features of genomes, at first glance ribosomal DNAs and
transposable elements are genetic elements with not much in common: whereas ribosomal …

Rapid structural and epigenetic reorganization near transposable elements in hybrid and allopolyploid genomes in Spartina

C Parisod, A Salmon, T Zerjal, M Tenaillon… - New …, 2009‏ - Wiley Online Library
Transposable elements (TE) induce structural and epigenetic alterations in their host
genome, with major evolutionary implications. These alterations are examined here in the …

Genetic diversity of cultivated flax (Linum usitatissimum L.) germplasm assessed by retrotransposon-based markers

P Smýkal, N Bačová-Kerteszová, R Kalendar… - Theoretical and applied …, 2011‏ - Springer
Retrotransposon segments were characterized and inter-retrotransposon amplified
polymorphism (IRAP) markers developed for cultivated flax (Linum usitatissimum L.) and the …

Chromosome spreading of associated transposable elements and ribosomal DNA in the fish Erythrinus erythrinus. Implications for genome change and …

MB Cioffi, C Martins, LAC Bertollo - BMC evolutionary Biology, 2010‏ - Springer
Abstract Background The fish, Erythrinus erythrinus, shows an interpopulation diversity, with
four karyomorphs differing by chromosomal number, chromosomal morphology and …