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Comparative genomics and molecular dynamics of DNA repeats in eukaryotes
Repeated elements can be widely abundant in eukaryotic genomes, composing more than
50% of the human genome, for example. It is possible to classify repeated sequences into …
50% of the human genome, for example. It is possible to classify repeated sequences into …
The dynamism of transposon methylation for plant development and stress adaptation
Plant development processes are regulated by epigenetic alterations that shape nuclear
structure, gene expression, and phenotypic plasticity; these alterations can provide the plant …
structure, gene expression, and phenotypic plasticity; these alterations can provide the plant …
[HTML][HTML] FastPCR: An in silico tool for fast primer and probe design and advanced sequence analysis
Polymerase chain reaction (PCR) is one of the most important laboratory techniques used in
molecular biology, genetics and molecular diagnostics. The success of a PCR-based …
molecular biology, genetics and molecular diagnostics. The success of a PCR-based …
iPBS: a universal method for DNA fingerprinting and retrotransposon isolation
Molecular markers are essential in plant and animal breeding and biodiversity applications,
in human forensics, and for map-based cloning of genes. The long terminal repeat (LTR) …
in human forensics, and for map-based cloning of genes. The long terminal repeat (LTR) …
[PDF][PDF] FastPCR software for PCR primer and probe design and repeat search
Reproducible and target-specific polymerase chain reaction (PCR) amplification relies on
several interrelated factors of which primer design is central. Here, we describe new free …
several interrelated factors of which primer design is central. Here, we describe new free …
Structural and sequence diversity of eukaryotic transposable elements
The majority of eukaryotic genomes contain a large fraction of repetitive sequences that
primarily originate from transpositional bursts of transposable elements (TEs). Repbase …
primarily originate from transpositional bursts of transposable elements (TEs). Repbase …
The dynamic interplay between ribosomal DNA and transposable elements: a perspective from genomics and cytogenetics
Although both are salient features of genomes, at first glance ribosomal DNAs and
transposable elements are genetic elements with not much in common: whereas ribosomal …
transposable elements are genetic elements with not much in common: whereas ribosomal …
Rapid structural and epigenetic reorganization near transposable elements in hybrid and allopolyploid genomes in Spartina
Transposable elements (TE) induce structural and epigenetic alterations in their host
genome, with major evolutionary implications. These alterations are examined here in the …
genome, with major evolutionary implications. These alterations are examined here in the …
Genetic diversity of cultivated flax (Linum usitatissimum L.) germplasm assessed by retrotransposon-based markers
Retrotransposon segments were characterized and inter-retrotransposon amplified
polymorphism (IRAP) markers developed for cultivated flax (Linum usitatissimum L.) and the …
polymorphism (IRAP) markers developed for cultivated flax (Linum usitatissimum L.) and the …
Chromosome spreading of associated transposable elements and ribosomal DNA in the fish Erythrinus erythrinus. Implications for genome change and …
Abstract Background The fish, Erythrinus erythrinus, shows an interpopulation diversity, with
four karyomorphs differing by chromosomal number, chromosomal morphology and …
four karyomorphs differing by chromosomal number, chromosomal morphology and …