Selective inhibitors of medium-size S1′ pocket matrix metalloproteinases: a step** stone of future drug discovery

SK Baidya, S Banerjee, N Adhikari… - Journal of Medicinal …, 2022 - ACS Publications
Among various matrix metalloproteinases (MMPs), MMPs having medium-size S1′ pockets
are established as promising biomolecular targets for executing crucial roles in cancer …

Ligand-based design of anticancer MMP2 inhibitors: a review

S Sanyal, SA Amin, N Adhikari, T Jha - Future Medicinal Chemistry, 2021 - Taylor & Francis
MMP2, a Zn2+-dependent metalloproteinase, is related to cancer and angiogenesis.
Inhibition of this enzyme might result in a potential antimetastatic drug to leverage the …

[HTML][HTML] Structure-based simulated scanning of rheumatoid arthritis inhibitors: 2D-QSAR, 3D-QSAR, docking, molecular dynamics simulation, and lipophilicity indices …

EI Edache, A Uzairu, PA Mamza, GA Shallangwa - Scientific African, 2022 - Elsevier
Rheumatoid arthritis (RA) is an autoimmune condition in the world, affecting about 1% of the
population. It is characterized by a cartilage attack unique to the tissue in the peripheral …

Docking Simulations and Virtual Screening to find Novel Ligands for T3S in Yersinia pseudotuberculosis YPIII, A drug target for type III secretion (T3S) in the Gram …

EI Edache, U Adamu, PA Mamza… - Chemical Review and …, 2021 - chemrevlett.com
In the Gram-negative pathogen Yersinia pseudotuberculosis and Chlamydia, the aggregate
use of molecular docking, molecular dynamic simulations, and ADMET was successfully …

A fragment-based exploration of diverse MMP-9 inhibitors through classification-dependent structural assessment

SK Baidya, S Banerjee, B Ghosh, T Jha… - Journal of Molecular …, 2024 - Elsevier
Matrix metalloproteinases (MMPs) are belonging to the Zn 2+-dependent metalloenzymes.
These can degenerate the extracellular matrix (ECM) that is entailed with various biological …

3D-QSAR, molecular docking, and molecular dynamic simulations for prediction of new Hsp90 inhibitors based on isoxazole scaffold

M Abbasi, H Sadeghi-Aliabadi… - Journal of Biomolecular …, 2018 - Taylor & Francis
Heat shock protein 90 (Hsp90), as a molecular chaperone, play a crucial role in folding and
proper function of many proteins. Hsp90 inhibitors containing isoxazole scaffold are …

Prediction of new Hsp90 inhibitors based on 3, 4-isoxazolediamide scaffold using QSAR study, molecular docking and molecular dynamic simulation

M Abbasi, H Sadeghi-Aliabadi, M Amanlou - DARU Journal of …, 2017 - Springer
Abstract Background Heat shock protein90 (Hsp90) are overexpressed in tumor cells, so the
inhibition of the Hsp90 ATPase activity would be a significantly effective strategy in cancer …

A strategy to improve the identification reliability of the chemical constituents by high-resolution mass spectrometry-based isomer structure prediction combined with a …

Q Zhang, M Huo, Y Zhang, Y Qiao, X Gao - Journal of Chromatography A, 2018 - Elsevier
High-resolution mass spectrometry (HRMS) provides a powerful tool for the rapid analysis
and identification of compounds in herbs. However, the diversity and large differences in the …

New insights into the efficiency of thymol synergistic effect with p-cymene in inhibiting advanced glycation end products: A multi-way analysis based on spectroscopic …

S Abbasi, S Gharaghani, A Benvidi… - … of Pharmaceutical and …, 2018 - Elsevier
Protein glycation in the body is one of the main reasons of diabetes complications. The
electrochemical studies on the inhibitory mechanism of glycation are rather scarce. Thus, it …

Deciphering the inhibition mechanism of under trial Hsp90 inhibitors and their analogues: a comparative molecular dynamics simulation

A Nazar, G Abbas, SS Azam - Journal of Chemical Information …, 2020 - ACS Publications
Heat shock protein 90 (Hsp90) performs functions in cellular activities together with other
signaling pathways. Hsp90 is evolutionarily conserved and universally articulated as a …