Soil microbiome engineering for sustainability in a changing environment

JK Jansson, R McClure, RG Egbert - Nature Biotechnology, 2023 - nature.com
Recent advances in microbial ecology and synthetic biology have the potential to mitigate
damage caused by anthropogenic activities that are deleteriously impacting Earth's soil …

Pollution to products: recycling of 'above ground'carbon by gas fermentation

M Köpke, SD Simpson - Current Opinion in Biotechnology, 2020 - Elsevier
Climate crisis and rapid population growth are posing some of the most urgent challenges to
mankind and have intensified the need for the deployment of carbon recycling and carbon …

Species-and site-specific genome editing in complex bacterial communities

BE Rubin, S Diamond, BF Cress, A Crits-Christoph… - Nature …, 2022 - nature.com
Understanding microbial gene functions relies on the application of experimental genetics in
cultured microorganisms. However, the vast majority of bacteria and archaea remain …

Retron-mediated multiplex genome editing and continuous evolution in Escherichia coli

W Liu, S Zuo, Y Shao, K Bi, J Zhao… - Nucleic Acids …, 2023 - academic.oup.com
While there are several genome editing techniques available, few are suitable for dynamic
and simultaneous mutagenesis of arbitrary targeted sequences in prokaryotes. Here, to …

Efficient plasmid transfer via natural competence in a microbial co‐culture

YY Cheng, Z Zhou, JM Papadopoulos… - Molecular Systems …, 2023 - embopress.org
The molecular and ecological factors sha** horizontal gene transfer (HGT) via natural
transformation in microbial communities are largely unknown, which is critical for …

Pseudomonas putida in the quest of programmable chemistry

E Martínez-García, V de Lorenzo - Current Opinion in Biotechnology, 2019 - Elsevier
Traditional microbial biotechnology is in the midst of a profound transformation brought
about not only by many conceptual and technical breakthroughs (eg systems and synthetic …

Synthetic chimeric nucleases function for efficient genome editing

RM Liu, LL Liang, E Freed, H Chang, E Oh… - Nature …, 2019 - nature.com
CRISPR–Cas systems have revolutionized genome editing across a broad range of
biotechnological endeavors. Many CRISPR-Cas nucleases have been identified and …

Rapid and highly efficient genomic engineering with a novel iEditing device for programming versatile extracellular electron transfer of electroactive bacteria

YY Fan, Q Tang, Y Li, FH Li, JH Wu… - Environmental …, 2021 - Wiley Online Library
The advances in synthetic biology bring exciting new opportunities to reprogram
microorganisms with novel functionalities for environmental applications. For real‐world …

A standardized genome architecture for bacterial synthetic biology (SEGA)

CN Bayer, M Rennig, AK Ehrmann… - Nature …, 2021 - nature.com
Chromosomal recombinant gene expression offers a number of advantages over plasmid-
based synthetic biology. However, the methods applied for bacterial genome engineering …

An activity-based probe targeting the streptococcal virulence factor C5a peptidase

S Krishnamoorthy, AK Steiger, WC Nelson… - Chemical …, 2022 - pubs.rsc.org
Development of profiling strategies to provide high resolution understanding of enzymes
involved in bacterial infections remains an important need. These strategies help resolve …