Natural language processing in electronic health records in relation to healthcare decision-making: a systematic review

E Hossain, R Rana, N Higgins, J Soar, PD Barua… - Computers in biology …, 2023‏ - Elsevier
Abstract Background: Natural Language Processing (NLP) is widely used to extract clinical
insights from Electronic Health Records (EHRs). However, the lack of annotated data …

Deep learning in clinical natural language processing: a methodical review

S Wu, K Roberts, S Datta, J Du, Z Ji, Y Si… - Journal of the …, 2020‏ - academic.oup.com
Objective This article methodically reviews the literature on deep learning (DL) for natural
language processing (NLP) in the clinical domain, providing quantitative analysis to answer …

Enhancing heart disease prediction using a self-attention-based transformer model

AU Rahman, Y Alsenani, A Zafar, K Ullah, K Rabie… - Scientific Reports, 2024‏ - nature.com
Cardiovascular diseases (CVDs) continue to be the leading cause of more than 17 million
mortalities worldwide. The early detection of heart failure with high accuracy is crucial for …

Protein–protein interaction site prediction through combining local and global features with deep neural networks

M Zeng, F Zhang, FX Wu, Y Li, J Wang, M Li - Bioinformatics, 2020‏ - academic.oup.com
Abstract Motivation Protein–protein interactions (PPIs) play important roles in many
biological processes. Conventional biological experiments for identifying PPI sites are costly …

Automated machine learning for healthcare and clinical notes analysis

A Mustafa, M Rahimi Azghadi - Computers, 2021‏ - mdpi.com
Machine learning (ML) has been slowly entering every aspect of our lives and its positive
impact has been astonishing. To accelerate embedding ML in more applications and …

[HTML][HTML] A comprehensive survey of deep learning in the field of medical imaging and medical natural language processing: Challenges and research directions

B Pandey, DK Pandey, BP Mishra… - Journal of King Saud …, 2022‏ - Elsevier
The extensive growth of data in the health domain has increased the utility of Deep Learning
in health. Deep learning is a highly advanced successor of artificial neural networks, having …

LncLocFormer: a Transformer-based deep learning model for multi-label lncRNA subcellular localization prediction by using localization-specific attention mechanism

M Zeng, Y Wu, Y Li, R Yin, C Lu, J Duan, M Li - Bioinformatics, 2023‏ - academic.oup.com
Motivation There is mounting evidence that the subcellular localization of lncRNAs can
provide valuable insights into their biological functions. In the real world of transcriptomes …

DeepDISOBind: accurate prediction of RNA-, DNA-and protein-binding intrinsically disordered residues with deep multi-task learning

F Zhang, B Zhao, W Shi, M Li… - Briefings in …, 2022‏ - academic.oup.com
Proteins with intrinsically disordered regions (IDRs) are common among eukaryotes. Many
IDRs interact with nucleic acids and proteins. Annotation of these interactions is supported …

Clinical big data and deep learning: Applications, challenges, and future outlooks

Y Yu, M Li, L Liu, Y Li, J Wang - Big Data Mining and Analytics, 2019‏ - ieeexplore.ieee.org
The explosion of digital healthcare data has led to a surge of data-driven medical research
based on machine learning. In recent years, as a powerful technique for big data, deep …

Recent advances in biomedical literature mining

S Zhao, C Su, Z Lu, F Wang - Briefings in Bioinformatics, 2021‏ - academic.oup.com
The recent years have witnessed a rapid increase in the number of scientific articles in
biomedical domain. These literature are mostly available and readily accessible in …