Therapeutic peptide development revolutionized: Harnessing the power of artificial intelligence for drug discovery
S Hashemi, P Vosough, S Taghizadeh… - Heliyon, 2024 - cell.com
Due to the spread of antibiotic resistance, global attention is focused on its inhibition and the
expansion of effective medicinal compounds. The novel functional properties of peptides …
expansion of effective medicinal compounds. The novel functional properties of peptides …
Computational Approaches to Predict Protein–Protein Interactions in Crowded Cellular Environments
Investigating protein–protein interactions is crucial for understanding cellular biological
processes because proteins often function within molecular complexes rather than in …
processes because proteins often function within molecular complexes rather than in …
A structure-based data set of protein-peptide affinities and its nonredundant benchmark: potential applications in computational peptidology
S Wang, H Ye, S Shang, Z Li, Y Peng… - Current Medicinal …, 2024 - benthamdirect.com
Background: Peptides play crucial roles in diverse cellular functions and participate in many
biological processes by interacting with a variety of proteins, which have also been exploited …
biological processes by interacting with a variety of proteins, which have also been exploited …
Deep learning-based method for predicting and classifying the binding affinity of protein-protein complexes
Protein-protein interactions (PPIs) play a critical role in various biological processes.
Accurately estimating the binding affinity of PPIs is essential for understanding the …
Accurately estimating the binding affinity of PPIs is essential for understanding the …
Machine learning methods for protein-protein binding affinity prediction in protein design
Z Guo, R Yamaguchi - Frontiers in Bioinformatics, 2022 - frontiersin.org
Protein-protein interactions govern a wide range of biological activity. A proper estimation of
the protein-protein binding affinity is vital to design proteins with high specificity and binding …
the protein-protein binding affinity is vital to design proteins with high specificity and binding …
Targeting protein-protein interactions with low molecular weight and short peptide modulators: insights on disease pathways and starting points for drug discovery
D Trisciuzzi, BO Villoutreix, L Siragusa… - Expert Opinion on …, 2023 - Taylor & Francis
ABSTRACT Introduction Protein-protein interactions (PPIs) have been often considered
undruggable targets although they are attractive for the discovery of new therapeutics. The …
undruggable targets although they are attractive for the discovery of new therapeutics. The …
Towards rational computational peptide design
Peptides are prevalent in biology, mediating as many as 40% of protein-protein interactions,
and involved in other cellular functions such as transport and signaling. Their ability to bind …
and involved in other cellular functions such as transport and signaling. Their ability to bind …
[HTML][HTML] Accelerating therapeutic protein design with computational approaches toward the clinical stage
Therapeutic protein, represented by antibodies, is of increasing interest in human medicine.
However, clinical translation of therapeutic protein is still largely hindered by different …
However, clinical translation of therapeutic protein is still largely hindered by different …
Unlocking novel therapies: Cyclic peptide design for amyloidogenic targets through synergies of experiments, simulations, and machine learning
D de Raffele, IM Ilie - Chemical Communications, 2024 - pubs.rsc.org
Existing therapies for neurodegenerative diseases like Parkinson's and Alzheimer's address
only their symptoms and do not prevent disease onset. Common therapeutic agents, such as …
only their symptoms and do not prevent disease onset. Common therapeutic agents, such as …
TopBP1 utilises a bipartite GINS binding mode to support genome replication
M Day, B Tetik, M Parlak, Y Almeida-Hernández… - Nature …, 2024 - nature.com
Activation of the replicative Mcm2-7 helicase by loading GINS and Cdc45 is crucial for
replication origin firing, and as such for faithful genetic inheritance. Our biochemical and …
replication origin firing, and as such for faithful genetic inheritance. Our biochemical and …