The dynamism of transposon methylation for plant development and stress adaptation

M Ramakrishnan, L Satish, R Kalendar… - International Journal of …, 2021 - mdpi.com
Plant development processes are regulated by epigenetic alterations that shape nuclear
structure, gene expression, and phenotypic plasticity; these alterations can provide the plant …

Retrotransposons: How the continuous evolutionary front shapes plant genomes for response to heat stress

PK Papolu, M Ramakrishnan, S Mullasseri… - Frontiers in plant …, 2022 - frontiersin.org
Long terminal repeat retrotransposons (LTR retrotransposons) are the most abundant group
of mobile genetic elements in eukaryotic genomes and are essential in organizing genomic …

The dynamic interplay between ribosomal DNA and transposable elements: a perspective from genomics and cytogenetics

S Garcia, A Kovarik, S Maiwald, L Mann… - Molecular Biology …, 2024 - academic.oup.com
Although both are salient features of genomes, at first glance ribosomal DNAs and
transposable elements are genetic elements with not much in common: whereas ribosomal …

Biomedical big data technologies, applications, and challenges for precision medicine: A review

X Yang, K Huang, D Yang, W Zhao… - Global Challenges, 2024 - Wiley Online Library
The explosive growth of biomedical Big Data presents both significant opportunities and
challenges in the realm of knowledge discovery and translational applications within …

Evolving together: Cassandra retrotransposons gradually mirror promoter mutations of the 5S rRNA genes

S Maiwald, L Mann, S Garcia… - Molecular Biology and …, 2024 - academic.oup.com
The 5S rRNA genes are among the most conserved nucleotide sequences across all
species. Similar to the 5S preservation we observe the occurrence of 5S-related …

Genetic Diversity and Pathogenicity of Rhizoctonia spp. Isolates Associated with Red Cabbage in Samsun (Turkey)

I Erper, G Ozer, R Kalendar, S Avci, E Yildirim, M Alkan… - Journal of fungi, 2021 - mdpi.com
A total of 132 Rhizoctonia isolates were recovered from red cabbage plants with root rot and
wirestem symptoms in the province of Samsun (Turkey) between 2018 and 2019. Based on …

Identification of an integrase-independent pathway of retrotransposition

F Li, M Lee, C Esnault, K Wendover, Y Guo, P Atkins… - Science …, 2022 - science.org
Retroviruses and long terminal repeat retrotransposons rely on integrase (IN) to insert their
complementary DNA (cDNA) into the genome of host cells. Nevertheless, in the absence of …

In silico PCR analysis: a comprehensive bioinformatics tool for enhancing nucleic acid amplification assays

R Kalendar, A Shevtsov, Z Otarbay… - Frontiers in …, 2024 - frontiersin.org
Nucleic acid amplification assays represent a pivotal category of methodologies for targeted
sequence detection within contemporary biological research, boasting diverse utility in …

A Guide to Using FASTPCR Software for PCR, In Silico PCR, and Oligonucleotide Analysis

R Kalendar - PCR Primer Design, 2022 - Springer
The FastPCR software is an integrated tool environment for PCR primer and probe design
and for prediction of oligonucleotide properties. The software provides comprehensive tools …

The Chromosome Number and rDNA Loci Evolution in Onobrychis (Fabaceae)

G Yucel, A Betekhtin, E Cabi, M Tuna… - International Journal of …, 2022 - mdpi.com
The evolution of chromosome number and ribosomal DNA (rDNA) loci number and
localisation were studied in Onobrychis Mill. Diploid and tetraploid species, as well as two …