Before and after AlphaFold2: An overview of protein structure prediction

LMF Bertoline, AN Lima, JE Krieger… - Frontiers in …, 2023 - frontiersin.org
Three-dimensional protein structure is directly correlated with its function and its
determination is critical to understanding biological processes and addressing human …

Using the structural diversity of RNA: protein interfaces to selectively target RNA with small molecules in cells: methods and perspectives

A Li, A Bouhss, MJ Clément, C Bauvais… - Frontiers in Molecular …, 2023 - frontiersin.org
In recent years, RNA has gained traction both as a therapeutic molecule and as a
therapeutic target in several human pathologies. In this review, we consider the approach of …

Evidence for the Participation of Chemosensory Proteins in Response to Insecticide Challenge in Conopomorpha sinensis

Q Yao, Z Liang, B Chen - Journal of Agricultural and Food …, 2023 - ACS Publications
Chemosensory proteins (CSPs) are a type of efficient transporters that can bind various
hydrophobic compounds. Previous research has shown that the expression levels of some …

Enhancing adsorption performance and selectivity for uranium by constructing biaxial adsorption sites on eco-friendly bamboo strips

Y Wang, Z Lin, J Zhu, J Liu, J Yu, Q Liu, R Chen… - Separation and …, 2023 - Elsevier
Amidoxime-based materials are currently the most promising adsorbents for sustainable
extraction uranium from seawater. However, in practical applications, the strong affinity of …

Comparative analysis of commonly used bioinformatics software based on omics

M Xu, C Xu, M Chen, Z **ao, Y Wang, Y Xu, D Xu - Gene Reports, 2023 - Elsevier
As a widely used technology at the intersection of multiple disciplines in the field of natural
sciences, bioinformatics has received much attention from scholars for its development and …

AlphaFold2 in biomedical research: facilitating the development of diagnostic strategies for disease

H Zhang, J Lan, H Wang, R Lu, N Zhang… - Frontiers in Molecular …, 2024 - frontiersin.org
Proteins, as the primary executors of physiological activity, serve as a key factor in disease
diagnosis and treatment. Research into their structures, functions, and interactions is …

Prediction of cancer driver genes and mutations: the potential of integrative computational frameworks

M Nourbakhsh, K Degn, A Saksager… - Briefings in …, 2024 - academic.oup.com
The vast amount of available sequencing data allows the scientific community to explore
different genetic alterations that may drive cancer or favor cancer progression. Software …

Lignin: The green powerhouse for enzyme immobilization in biocatalysis and biosensing

Y Mukheja, SN Kethavath, L Banoth… - International Journal of …, 2024 - Elsevier
Enzymes play an important role in diverse industries and are critical components of many
industrial products, yet, their application is limited due to their sensitivity to environmental …

Fe0Ni0 bimetal co-immobilized horseradish peroxidase on ZIF-8@ HMON for degradation of trichloroacetic acid

Y Yang, X Huang, M Dong, Z Chang, H Yuan… - Chemical Engineering …, 2024 - Elsevier
As a common pollutant in the environment, trichloroacetic acid (TCA) is difficult to be
completely degraded by common advanced oxidation processes (AOPs) due to its high C-Cl …

Bilinear optimization of protein structure prediction: An exact approach via AB off-lattice model

LSA da Silva, LO Seman, E Camponogara… - Computers in Biology …, 2024 - Elsevier
Protein structure prediction (PSP) remains a central challenge in computational biology due
to its inherent complexity and high dimensionality. While numerous heuristic approaches …