Recent advances of polyphenol oxidases in plants

S Zhang - Molecules, 2023 - mdpi.com
Polyphenol oxidase (PPO) is present in most higher plants, but also in animals and fungi.
PPO in plants had been summarized several years ago. However, recent advances in …

Origin and domestication of Cucurbitaceae crops: insights from phylogenies, genomics and archaeology

G Chomicki, H Schaefer, SS Renner - New Phytologist, 2020 - Wiley Online Library
Some of the World's most valuable crops, including watermelon, honey melon, cucumber,
squash, zucchini and pumpkin, belong to the family Cucurbitaceae. We review insights on …

[HTML][HTML] WGDI: a user-friendly toolkit for evolutionary analyses of whole-genome duplications and ancestral karyotypes

P Sun, B Jiao, Y Yang, L Shan, T Li, X Li, Z **, X Wang… - Molecular plant, 2022 - cell.com
Evidence of whole-genome duplications (WGDs) and subsequent karyotype changes has
been detected in most major lineages of living organisms on Earth. To clarify the complex …

CuGenDBv2: an updated database for cucurbit genomics

J Yu, S Wu, H Sun, X Wang, X Tang, S Guo… - Nucleic acids …, 2023 - academic.oup.com
The Cucurbitaceae (cucurbit) family consists of about 1,000 species in 95 genera, including
many economically important and popular fruit and vegetable crops. During the past several …

Graph-based pan-genome reveals structural and sequence variations related to agronomic traits and domestication in cucumber

H Li, S Wang, S Chai, Z Yang, Q Zhang, H **n… - Nature …, 2022 - nature.com
Structural variants (SVs) represent a major source of genetic diversity and are related to
numerous agronomic traits and evolutionary events; however, their comprehensive …

Gene duplication and evolution in recurring polyploidization–diploidization cycles in plants

X Qiao, Q Li, H Yin, K Qi, L Li, R Wang, S Zhang… - Genome biology, 2019 - Springer
Background The sharp increase of plant genome and transcriptome data provide valuable
resources to investigate evolutionary consequences of gene duplication in a range of taxa …

The genome of homosporous maidenhair fern sheds light on the euphyllophyte evolution and defences

Y Fang, X Qin, Q Liao, R Du, X Luo, Q Zhou, Z Li… - Nature Plants, 2022 - nature.com
Euphyllophytes encompass almost all extant plants, including two sister clades, ferns and
seed plants. Decoding genomes of ferns is the key to deep insight into the origin of …

SMARTdenovo: a de novo assembler using long noisy reads

H Liu, S Wu, A Li, J Ruan - Gigabyte, 2021 - pmc.ncbi.nlm.nih.gov
Long-read single-molecule sequencing has revolutionized de novo genome assembly and
enabled the automated reconstruction of reference-quality genomes. It has also been widely …

Recent advances in triterpenoid pathway elucidation and engineering

S Dinday, S Ghosh - Biotechnology Advances, 2023 - Elsevier
Triterpenoids are among the most assorted class of specialized metabolites found in all the
taxa of living organisms. Triterpenoids are the leading active ingredients sourced from plant …

Genome sequence of the hot pepper provides insights into the evolution of pungency in Capsicum species

S Kim, M Park, SI Yeom, YM Kim, JM Lee, HA Lee… - Nature …, 2014 - nature.com
Hot pepper (Capsicum annuum), one of the oldest domesticated crops in the Americas, is
the most widely grown spice crop in the world. We report whole-genome sequencing and …