The past decade has seen a major breakthrough in our ability to easily and inexpensively
sequence genome‐scale data from diverse lineages. The development of high‐throughput …

Plastid sequencing is an essential tool in the study of plant evolution. This high‐copy
organelle is one of the most technically accessible regions of the genome, and its sequence …

Hybridization, incomplete lineage sorting, and phylogenetic error produce similar
incongruence patterns, representing a great challenge for phylogenetic reconstruction …

Mountain ranges are amongst the most species‐rich habitats, with many large and rapid
evolutionary radiations. The tempo and mode of diversification in these systems are key …

Herbaria are unparalleled collections of biodiversity information representing the world's
flora. However, this treasure has remained largely inaccessible to genetic studies, frequently …

Difficulties in generating nuclear data for polyploids have impeded phylogenetic study of
these groups. We describe a high‐throughput protocol and an associated bioinformatics …

Phylogenetics can facilitate the study of plant domestication by resolving sister relationships
between crops and their wild relatives, thereby identifying the ancestors of cultivated plants …

In herbivores, survival and reproduction are influenced by quality and quantity of forage, and
hence, diet and foraging behavior are the foundation of an herbivore's life history strategy …

PREMISE Hybrids contain divergent alleles that can confound phylogenetic analyses but
can provide insights into reticulated evolution when identified and phased. We developed a …

Targeted sequence capture is a promising approach for large-scale phylogenomics.
However, rapid evolutionary radiations pose significant challenges for phylogenetic …