Cell segmentation and tracking using CNN-based distance predictions and a graph-based matching strategy
The accurate segmentation and tracking of cells in microscopy image sequences is an
important task in biomedical research, eg, for studying the development of tissues, organs or …
important task in biomedical research, eg, for studying the development of tissues, organs or …
[HTML][HTML] u-track3D: Measuring, navigating, and validating dense particle trajectories in three dimensions
We describe u-track3D, a software package that extends the versatile u-track framework
established in 2D to address the specific challenges of 3D particle tracking. First, we present …
established in 2D to address the specific challenges of 3D particle tracking. First, we present …
A graph-based cell tracking algorithm with few manually tunable parameters and automated segmentation error correction
Automatic cell segmentation and tracking enables to gain quantitative insights into the
processes driving cell migration. To investigate new data with minimal manual effort, cell …
processes driving cell migration. To investigate new data with minimal manual effort, cell …
Neural circuit reorganisation after spinal cord injury in zebrafish
F El-Daher, CG Becker - Current opinion in genetics & development, 2020 - Elsevier
Spinal cord injuries disrupt signalling from the brain leading to loss of limb, locomotion,
sexual and bladder function, usually irreversible in humans. In zebrafish, recovery of …
sexual and bladder function, usually irreversible in humans. In zebrafish, recovery of …
Pax6 organizes the anterior eye segment by guiding two distinct neural crest waves
Cranial neural crest (NC) contributes to the develo** vertebrate eye. By multidimensional,
quantitative imaging, we traced the origin of the ocular NC cells to two distinct NC …
quantitative imaging, we traced the origin of the ocular NC cells to two distinct NC …
MorphoNet: an interactive online morphological browser to explore complex multi-scale data
Powerful novel imaging and image-processing methods are revolutionizing many fields of
biology, at scales ranging from the molecule to the functional organ. To support this big-data …
biology, at scales ranging from the molecule to the functional organ. To support this big-data …
Hemocytes in Drosophila melanogaster embryos move via heterogeneous anomalous diffusion
Drosophila melanogaster hemocytes are highly motile cells that are crucial for successful
embryogenesis and have important roles in the organism's immunological response. Here …
embryogenesis and have important roles in the organism's immunological response. Here …
Ventral striatal islands of Calleja neurons control grooming in mice
YF Zhang, L Vargas Cifuentes, KN Wright… - Nature …, 2021 - nature.com
The striatum comprises multiple subdivisions and neural circuits that differentially control
motor output. The islands of Calleja (IC) contain clusters of densely packed granule cells …
motor output. The islands of Calleja (IC) contain clusters of densely packed granule cells …
Ontology patterns for the representation of quality changes of cells in time
Background Cell tracking experiments, based on time-lapse microscopy, have become an
important tool in biomedical research. The goal is the reconstruction of cell migration …
important tool in biomedical research. The goal is the reconstruction of cell migration …