Phylogenies and community ecology
▪ Abstract As better phylogenetic hypotheses become available for many groups of
organisms, studies in community ecology can be informed by knowledge of the evolutionary …
organisms, studies in community ecology can be informed by knowledge of the evolutionary …
Species-level paraphyly and polyphyly: frequency, causes, and consequences, with insights from animal mitochondrial DNA
▪ Abstract Many uses of gene trees implicitly assume that nominal species are monophyletic
in their alleles at the study locus. However, in well-sampled gene trees, certain alleles in one …
in their alleles at the study locus. However, in well-sampled gene trees, certain alleles in one …
Species diversity, updated classification and divergence times of the phylum Mucoromycota
H Zhao, Y Nie, TK Zong, K Wang, ML Lv, YJ Cui… - Fungal Diversity, 2023 - Springer
Zygomycetes are phylogenetically early diverging, ecologically diverse, industrially
valuable, agriculturally beneficial, and clinically pathogenic fungi. Although new phyla and …
valuable, agriculturally beneficial, and clinically pathogenic fungi. Although new phyla and …
A general species delimitation method with applications to phylogenetic placements
Motivation: Sequence-based methods to delimit species are central to DNA taxonomy,
microbial community surveys and DNA metabarcoding studies. Current approaches either …
microbial community surveys and DNA metabarcoding studies. Current approaches either …
Delimiting species using single-locus data and the Generalized Mixed Yule Coalescent approach: a revised method and evaluation on simulated data sets
DNA barcoding-type studies assemble single-locus data from large samples of individuals
and species, and have provided new kinds of data for evolutionary surveys of diversity. An …
and species, and have provided new kinds of data for evolutionary surveys of diversity. An …
Phylogenetic patterns are not proxies of community assembly mechanisms (they are far better)
The subdiscipline of 'community phylogenetics' is rapidly growing and influencing thinking
regarding community assembly. In particular, phylogenetic dispersion of co‐occurring …
regarding community assembly. In particular, phylogenetic dispersion of co‐occurring …
Sequence-based species delimitation for the DNA taxonomy of undescribed insects
Cataloging the very large number of undescribed species of insects could be greatly
accelerated by automated DNA based approaches, but procedures for large-scale species …
accelerated by automated DNA based approaches, but procedures for large-scale species …
Speciation dynamics during the global radiation of extant bats
Species richness varies widely across extant clades, but the causes of this variation remain
poorly understood. We investigate the role of diversification rate heterogeneity in sha** …
poorly understood. We investigate the role of diversification rate heterogeneity in sha** …
Ecology and the origin of species
D Schluter - Trends in ecology & evolution, 2001 - cell.com
The ecological hypothesis of speciation is that reproductive isolation evolves ultimately as a
consequence of divergent natural selection on traits between environments. Ecological …
consequence of divergent natural selection on traits between environments. Ecological …
Predictions and tests of climate‐based hypotheses of broad‐scale variation in taxonomic richness
Broad‐scale variation in taxonomic richness is strongly correlated with climate. Many
mechanisms have been hypothesized to explain these patterns; however, testable …
mechanisms have been hypothesized to explain these patterns; however, testable …