Classification of intrinsically disordered regions and proteins

R Van Der Lee, M Buljan, B Lang, RJ Weatheritt… - Chemical …, 2014 - ACS Publications
Over the past decade, we have observed a massive increase in the amount of information
describing protein sequences from a variety of organisms. 1, 2 While this may reflect the …

The contribution of intrinsically disordered regions to protein function, cellular complexity, and human disease

MM Babu - Biochemical Society Transactions, 2016 - portlandpress.com
In the 1960s, Christian Anfinsen postulated that the unique three-dimensional structure of a
protein is determined by its amino acid sequence. This work laid the foundation for the …

Pi-Pi contacts are an overlooked protein feature relevant to phase separation

RMC Vernon, PA Chong, B Tsang, TH Kim, A Bah… - elife, 2018 - elifesciences.org
Protein phase separation is implicated in formation of membraneless organelles, signaling
puncta and the nuclear pore. Multivalent interactions of modular binding domains and their …

Physicochemical properties of cells and their effects on intrinsically disordered proteins (IDPs)

FX Theillet, A Binolfi, T Frembgen-Kesner… - Chemical …, 2014 - ACS Publications
It has long been axiomatic that a protein's structure determines its function. Intrinsically
disordered proteins (IDPs) and disordered protein regions (IDRs) defy this structure …

[HTML][HTML] Tissue-specific splicing of disordered segments that embed binding motifs rewires protein interaction networks

M Buljan, G Chalancon, S Eustermann, GP Wagner… - Molecular cell, 2012 - cell.com
Alternative inclusion of exons increases the functional diversity of proteins. Among
alternatively spliced exons, tissue-specific exons play a critical role in maintaining tissue …

Intrinsically disordered proteins and structured proteins with intrinsically disordered regions have different functional roles in the cell

A Deiana, S Forcelloni, A Porrello, A Giansanti - PloS one, 2019 - journals.plos.org
Many studies about classification and the functional annotation of intrinsically disordered
proteins (IDPs) are based on either the occurrence of long disordered regions or the fraction …

The relationship between proteome size, structural disorder and organism complexity

E Schad, P Tompa, H Hegyi - Genome biology, 2011 - Springer
Background Sequencing the genomes of the first few eukaryotes created the impression that
gene number shows no correlation with organism complexity, often referred to as the G …

Uncovering the impacts of alternative splicing on the proteome with current omics techniques

M Reixachs‐Solé, E Eyras - Wiley Interdisciplinary Reviews …, 2022 - Wiley Online Library
The high‐throughput sequencing of cellular RNAs has underscored a broad effect of isoform
diversification through alternative splicing on the transcriptome. Moreover, the differential …

Alternative splicing of intrinsically disordered regions and rewiring of protein interactions

M Buljan, G Chalancon, AK Dunker, A Bateman… - Current opinion in …, 2013 - Elsevier
Alternatively spliced protein segments tend to be intrinsically disordered and contain linear
interaction motifs and/or post-translational modification sites. An emerging concept is that …

Expanding the proteome: disordered and alternatively folded proteins

HJ Dyson - Quarterly reviews of biophysics, 2011 - cambridge.org
Proteins provide much of the scaffolding for life, as well as undertaking a variety of essential
catalytic reactions. These characteristic functions have led us to presuppose that proteins …