A review of methods available to estimate solvent-accessible surface areas of soluble proteins in the folded and unfolded states

S Ausaf Ali, M Imtaiyaz Hassan, A Islam… - Current Protein and …, 2014 - benthamdirect.com
Solvent accessible surface area (SASA) of proteins has always been considered as a
decisive factor in protein folding and stability studies. It is defined as the surface …

Comparison study of computational prediction tools for drug-target binding affinities

M Thafar, AB Raies, S Albaradei, M Essack… - Frontiers in …, 2019 - frontiersin.org
The drug development is generally arduous, costly, and success rates are low. Thus, the
identification of drug-target interactions (DTIs) has become a crucial step in early stages of …

Structure and dynamics of membrane protein in SARS-CoV-2

R Mahtarin, S Islam, MJ Islam, MO Ullah… - Journal of …, 2022 - Taylor & Francis
Abstract SARS-CoV-2 membrane (M) protein performs a variety of critical functions in virus
infection cycle. However, the expression and purification of membrane protein structure is …

Graphene oxide–protein-based scaffolds for tissue engineering: recent advances and applications

EI Biru, MI Necolau, A Zainea, H Iovu - Polymers, 2022 - mdpi.com
The field of tissue engineering is constantly evolving as it aims to develop bioengineered
and functional tissues and organs for repair or replacement. Due to their large surface area …

Mechanical properties of protein adsorption layers at the air/water and oil/water interface: A comparison in light of the thermodynamical stability of proteins

V Mitropoulos, A Mütze, P Fischer - Advances in colloid and interface …, 2014 - Elsevier
Over the last decades numerous studies on the interfacial rheological response of protein
adsorption layers have been published. The comparison of these studies and the retrieval of …

A novel sequence-based predictor for identifying and characterizing thermophilic proteins using estimated propensity scores of dipeptides

P Charoenkwan, W Chotpatiwetchkul, VS Lee… - Scientific Reports, 2021 - nature.com
Owing to their ability to maintain a thermodynamically stable fold at extremely high
temperatures, thermophilic proteins (TTPs) play a critical role in basic research and a variety …

Progress in Protein-Based Hydrogels for Flexible Sensors: Insights from Casein

X Xu, Q Xu, J Ma, Y Deng, W An, K Yan, Y Zong… - ACS …, 2024 - ACS Publications
In recent years, the rapid advancement of flexible sensors as the cornerstone of flexible
electronics has propelled a flourishing evolution within the realm of flexible electronics …

Prediction and analysis of surface hydrophobic residues in tertiary structure of proteins

S Malleshappa Gowder, J Chatterjee… - The Scientific World …, 2014 - Wiley Online Library
The analysis of protein structures provides plenty of information about the factors governing
the folding and stability of proteins, the preferred amino acids in the protein environment, the …

Ice nucleation catalyzed by the photosynthesis enzyme RuBisCO and other abundant biomolecules

AN Alsante, DCO Thornton, SD Brooks - Communications Earth & …, 2023 - nature.com
Atmospheric aerosol and the cloud droplets and ice crystals that grow on them remain major
sources of uncertainty in global climate models. A subset of aerosol, ice nucleating particles …

Antifreeze proteins: a tale of evolution from origin to energy applications

G Gharib, S Saeidiharzand, AK Sadaghiani… - … in Bioengineering and …, 2022 - frontiersin.org
Icing and formation of ice crystals is a major obstacle against applications ranging from
energy systems to transportation and aviation. Icing not only introduces excess thermal …