Wine microbiome: a dynamic world of microbial interactions

Y Liu, S Rousseaux, R Tourdot-Maréchal… - Critical reviews in …, 2017 - Taylor & Francis
Most fermented products are generated by a mixture of microbes. These microbial consortia
perform various biological activities responsible for the nutritional, hygienic, and aromatic …

Diversity and adaptive evolution of Saccharomyces wine yeast: a review

S Marsit, S Dequin - FEMS Yeast Research, 2015 - academic.oup.com
Saccharomyces cerevisiae and related species, the main workhorses of wine fermentation,
have been exposed to stressful conditions for millennia, potentially resulting in adaptive …

Telomere-to-telomere assemblies of 142 strains characterize the genome structural landscape in Saccharomyces cerevisiae

S O'donnell, JX Yue, OA Saada, N Agier, C Caradec… - Nature Genetics, 2023 - nature.com
Pangenomes provide access to an accurate representation of the genetic diversity of
species, both in terms of sequence polymorphisms and structural variants (SVs). Here we …

Circular DNA elements of chromosomal origin are common in healthy human somatic tissue

HD Møller, M Mohiyuddin, I Prada-Luengo… - Nature …, 2018 - nature.com
The human genome is generally organized into stable chromosomes, and only tumor cells
are known to accumulate kilobase (kb)-sized extrachromosomal circular DNA elements …

Adaptation of S. cerevisiae to Fermented Food Environments Reveals Remarkable Genome Plasticity and the Footprints of Domestication

JL Legras, V Galeote, F Bigey… - Molecular biology …, 2018 - academic.oup.com
The budding yeast Saccharomyces cerevisiae can be found in the wild and is also
frequently associated with human activities. Despite recent insights into the phylogeny of this …

[HTML][HTML] Distinct domestication trajectories in top-fermenting beer yeasts and wine yeasts

M Gonçalves, A Pontes, P Almeida, R Barbosa… - Current Biology, 2016 - cell.com
Beer is one of the oldest alcoholic beverages and is produced by the fermentation of sugars
derived from starches present in cereal grains. Contrary to lager beers, made by bottom …

Yeast evolutionary genomics

B Dujon - Nature Reviews Genetics, 2010 - nature.com
Over the past few years, genome sequences have become available from an increasing
range of yeast species, which has led to notable advances in our understanding of …

Transcription-induced formation of extrachromosomal DNA during yeast ageing

RM Hull, M King, G Pizza, F Krueger, X Vergara… - PLoS …, 2019 - journals.plos.org
Extrachromosomal circular DNA (eccDNA) facilitates adaptive evolution by allowing rapid
and extensive gene copy number variation and is implicated in the pathology of cancer and …

A population genomics insight into the Mediterranean origins of wine yeast domestication

P Almeida, R Barbosa, P Zalar, Y Imanishi… - Molecular …, 2015 - Wiley Online Library
The domestication of the wine yeast Saccharomyces cerevisiae is thought to be
contemporary with the development and expansion of viticulture along the Mediterranean …

Genome diversity and evolution in the budding yeasts (Saccharomycotina)

BA Dujon, EJ Louis - Genetics, 2017 - academic.oup.com
Considerable progress in our understanding of yeast genomes and their evolution has been
made over the last decade with the sequencing, analysis, and comparisons of numerous …