Plant pan-genomics and its applications

J Shi, Z Tian, J Lai, X Huang - Molecular Plant, 2023 - cell.com
Plant genomes are so highly diverse that a substantial proportion of genomic sequences are
not shared among individuals. The variable DNA sequences, along with the conserved core …

What Are We Learning from Plant Pangenomes?

M Jayakodi, H Shim, M Mascher - Annual Review of Plant …, 2024 - annualreviews.org
A single reference genome does not fully capture species diversity. By contrast, a
pangenome incorporates multiple genomes to capture the entire set of nonredundant genes …

Solanum americanum genome-assisted discovery of immune receptors that detect potato late blight pathogen effectors

X Lin, Y Jia, R Heal, M Prokchorchik… - Nature Genetics, 2023 - nature.com
Potato (Solanum tuberosum) and tomato (Solanum lycopersicon) crops suffer severe losses
to late blight caused by the oomycete pathogen Phytophthora infestans. Solanum …

[HTML][HTML] Phylogenomic discovery of deleterious mutations facilitates hybrid potato breeding

Y Wu, D Li, Y Hu, H Li, GP Ramstein, S Zhou, X Zhang… - Cell, 2023 - cell.com
Hybrid potato breeding will transform the crop from a clonally propagated tetraploid to a
seed-reproducing diploid. Historical accumulation of deleterious mutations in potato …

The autotetraploid potato genome provides insights into highly heterozygous species

F Wang, Z **a, M Zou, L Zhao, S Jiang… - Plant biotechnology …, 2022 - Wiley Online Library
Potato (Solanum tuberosum L.) originated in the Andes and evolved its vegetative
propagation strategy through short day‐dependent tuber development. Herein, we present a …

The gap-free potato genome assembly reveals large tandem gene clusters of agronomical importance in highly repeated genomic regions

X Yang, L Zhang, X Guo, J Xu, K Zhang, Y Yang… - Molecular plant, 2023 - cell.com
Potato is a vital food security crop and is ranked as the world's third most important food crop
after rice and wheat. In 2011, the first genome assembly of a doubled monoploid potato DM1 …

Chromosome-level phased genome assembly of “Antonovka” identified candidate apple scab-resistance genes highly homologous to HcrVf2 and HcrVf1 on linkage …

A Švara, H Sun, Z Fei, A Khan - G3: Genes, Genomes, Genetics, 2024 - academic.oup.com
Apple scab, a fungal disease caused by Venturia inaequalis, leads to losses in both yield
and fruit quality of apples (Malus domestica Borkh.). Most commercial apple cultivars …

Foreign DNA detection in genome-edited potatoes by high-throughput sequencing

S Yasumoto, T Muranaka - Scientific Reports, 2023 - nature.com
Genome editing is a powerful breeding technique that introduces mutations into specific
gene sequences in genomes. For genome editing in higher plants, nucleotides for artificial …

Recent Advances in Assembly of Complex Plant Genomes

W Kong, Y Wang, S Zhang, J Yu… - Genomics, Proteomics & …, 2023 - academic.oup.com
Over the past 20 years, tremendous advances in sequencing technologies and
computational algorithms have spurred plant genomic research into a thriving era with …

Pan-evolutionary and regulatory genome architecture delineated by an integrated macro-and microsynteny approach

H Yu, Y Li, W Han, L Bao, F Liu, Y Ma, Z Pu, Q Zeng… - Nature …, 2024 - nature.com
The forthcoming massive genome data generated by the Earth BioGenome Project will open
up a new era of comparative genomics, for which genome synteny analysis provides an …